RNA id: TU20164


Basic Information

Item Value
RNA id TU20164
length 1308
RNA type TUCP
GC content 0.47
exon number 3
gene id AMCG00016854
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32499056 ~ 32503372 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTTCAACCGCGCATATAATGTGTTAATACTGCTTCTCATCTACGATCTGAGTTACAGCAAACATACATTAACCAAATAAACACATCTCCTTCACACACGTCTAATATTACACAATGCACATACTACGTGACTGACATATACAAAGTTACAcattacacaataataaaaaagtaaccaCACAGTCGCGGTGTAGTTCCCGTTGGTTCACACGCGTTTCTCCGGAGTGCTGTACATCGGTGCGCTGGTCACGGACAGGAGACACTGGTGTGCACTGGTGGGTCTGGCGGCTGGATACTGGACGCGCACTGGGATTCGTCGGTAGCACTTGTCTGGTTCTGCTCTCCTGTTGAAGTTCAAAGTTCACAGGTCGGCTCTGTCTCCTCCTACTCACTCGGAGTAAAGATGGCGGACGAGGGAGCTCAAGGGGACTCGCAGGCCAGTTTCGCCAAAAGGATTGACCCGGTGAAGGAGCCTCTTACCCCGGAGCAGATGCAGTTCATCCGTAAagtggagctggagcagtggaaGAAGAAAGCCCAGAAACTGCGCGGCCGCAATGTGGCGACGGGGCTGGCCATCGGGGCACTGGTGATGGGGATCTATGGCTACACTTTCTACTCGGTGTCCCAGGAGAAGATCCTGGACGAGCTGGACGCAGAAGCCAAGGTCGCAAGAATGAGGGGACCCAAGACTTCAGCCaactgagctgagctgagctgagctgggcACTGGACTGTGGGGGGCTGCatctgtacagagagagagctgggggATAAGAGGAGTGGAAATGTGGGAGTGGTCAGCCTGTTTGAGTGAGGATCAGGGGCTGGTGGGGATTGGGAACAATGGGGACCTGCTTCTGTTTGTATGTTGATTCATCAGGAATTTTCTTGTGCTCATTCTGTAattcttttaataatttaattggaGCCCCTTTGTTGAGTAACTGAAGACACCAGCTGAAGGCACTGGAGTTGACCAGATGAGCCACCCTTCGATCACCAGCTCTCAACTGGACTATCTGAAGTCTCTGGATATTTGTAAATGCTGATTCAAGAGGCACAGACCAGAGCACGCACTACTATTCTCACCCACAGGGGGTTGGATTTTGCAGCTGGTCTGAAACTGATTGTTTATATTTaggaatatacattttatgtgttCTGTAAATTTAAAtctacatgtatattttttgccttcattaaaatggaaaaataagcaACCAAAAAACTTTGTCAAATAGAAATCATGTTCTTAAATTTCTCCGTTTTGTTTTCAGCTCTCAATAAACGGGTTAACATACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20144 lncRNA upstream 56991 32438254 ~ 32442585 (+) True G16211
TU20094 lncRNA upstream 236904 32261711 ~ 32262672 (+) True G16169
TU20089 lncRNA upstream 246347 32251814 ~ 32253229 (+) False AMCG00016841
TU19924 lncRNA upstream 744149 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 855061 31615220 ~ 31644515 (+) True G15995
TU20241 lncRNA downstream 354295 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 478523 32981779 ~ 32982330 (+) True G16323
TU20320 lncRNA downstream 676449 33179705 ~ 33179940 (+) True G16350
TU20321 lncRNA downstream 676983 33180239 ~ 33180439 (+) True G16351
TU20374 lncRNA downstream 821838 33325094 ~ 33328342 (+) True G16395
AMCG00016855 mRNA upstream 1068 32497882 ~ 32498508 (+) True AMCG00016855
AMCG00016853 mRNA upstream 3829 32489913 ~ 32495747 (+) True AMCG00016853
AMCG00016852 mRNA upstream 17769 32480664 ~ 32481807 (+) True AMCG00016852
AMCG00016851 mRNA upstream 65438 32393881 ~ 32434138 (+) True AMCG00016851
AMCG00016848 mRNA upstream 196107 32284756 ~ 32303469 (+) True AMCG00016848
AMCG00016861 mRNA downstream 87511 32590767 ~ 32607382 (+) True AMCG00016861
AMCG00016863 mRNA downstream 269819 32773075 ~ 32777472 (+) True AMCG00016863
AMCG00016865 mRNA downstream 306829 32810085 ~ 32856301 (+) True AMCG00016865
AMCG00016866 mRNA downstream 392503 32895759 ~ 32921227 (+) True AMCG00016866
AMCG00016872 mRNA downstream 483324 32986580 ~ 32989958 (+) True AMCG00016872
TU19916 other upstream 765260 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 772559 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 1438431 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 2262735 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 2386292 30109599 ~ 30113284 (+) True AMCG00016770
TU20240 other downstream 353105 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1165373 33668629 ~ 33672620 (+) True AMCG00016901
TU20550 other downstream 1544115 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 1597059 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 5992795 38496051 ~ 38503632 (+) True G17193

Expression Profile