RNA id: TCONS_00009357


Basic Information

Item Value
RNA id TCONS_00009357
length 9670
RNA type mRNA
GC content 0.43
exon number 21
gene id XLOC_004722
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 24342303 ~ 24640339 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAATGGATCAATCTGTCAAAACGGATGTGAATTGAAGGTTTGTGAGCACTGAGGGCCCTACTAGGGCCTGCACGTTAACACTGCAAAGTGTACATTTTGCCTACTTTTCATTAGTGCTGACTTTAGGCCTACACAATGACTTTTAACTAGACTTAAATGACCCTGACATTAATGACCCTACATAGCCCTAATGAACTCTCTGCTGTACAGCACTACACATGGCTGTAATTTATATAGATACTCTGATGACTTGGCCCCGCTGTAGCACACCTGGATCCcactgaaggtttttttttttttttttttaaagcagagcagtcttatttttttttactgtttgggCCTTAGCGAGTCTCTTTATTGATTGATTTGTATTTAGAATTTTGAATAAGAGTTGGCCGTAACCCAGGCCTTCTCCCTCTCTCAGTGAACAATGAGTAAATTAACCCAAATGCACAGCAGTCCTGCACGTCATAGGGAGCTCTGTTACACTTTAGGAGCACATCACTAAGAGAGCCGAAGCATTTTAGTTTTCAATTTAGCTGTATTCCTAGTCCTTACCTCCTTTACCATTCACAATGAGCTTCTCAATGCGGAACGGTGCACATCTAATCTGGATAGGCCTACTGGTTTGTTGCCTTGTCGACATGGGGGCCAGCATGGAGTTCACTGGTGCAGAAGGCCAGTGGGCAAGGTTTCCCATGTGGAACGCCTGCTGCGAAAGCGAAATGAGTTTCAACATGAAGACCAAAAGCGCTCATGGACTTTTAGTGTACTTTGACGACGAGGGATTCTGTGACTTCTTGGAACTGCTCATCCACAATGGTAGACTCAGTTTGCGGTTCTCCATCTTCTGCGCCGAGCCAGCGACCGTGTTCTCAGACACAGCCGTCAATGACAGCCGCTGGCACGCCGTGACCTTGCGCAGGAATTTCAAAAACACTACTTTAGTTGTGGACGAAGAAATCAAGTGGGTGGAGGTAAAGTCGAAACGGAGGGACATGACGGTCTTCAGCCATTTATTCTTAGGGGGGATACCTCCTGAACTGCGATCTGTAGCATTACGCCTCACATCTTCAGCCATAAAAGATGAGGTTCCCTACAAAGGATGGATAACCAACCTGAGAGTGAACGGCTCGGAGCCGGTGCTTATCGGTAGCGATGGAGTCAACAGCGACATTTGCGAAGCCGACCACATTTGCCTGAATGGAGGAGTCTGCAGCATTGTCAACGATGAGCCCATTTGCGACTGCTCTGAAACGGGATTCCAGGGAAAAGACTGCAGTGAAGAAGAGGCCTATGTAGGAGGTCTTGCGCACCTGATGATGGGCGACCAAGAGAGAGAAGAATATATGGCCACATTCAAGGGTTCGGAGTATTTCTGTTACGATCTGTCCCCGAACCCCATCCAGAGCAGTAGCGATGAGATTACGCTCTCCTTCAAGACCCTGCAGCGCAATGGACTGATGCTTCACACCGGAAAGTCTGCAGACTACGTCAACCTGGCGCTGAAGAACGGAGCCGTCTCGCTGGTCATCAACCTGGGCTCTGGGGCCTTCGAGGCCCTGGTGGAGCCCgtcaatgggaaatttaatgacaATGCCTGGCATGATGTGAAGGTTACCAGGAACCTTCGTCAGCACTCAGGCATTGGACACGCTATGGTTACAATATCCGTGGATGGGATTCTGACCACCACTGGATATACGCAAGAGGACTACACCATGCTAGGCTCGGATGACTTTTTCTATGTCGGCGGTAGTCCCAGCACTGCCGATCTTCCTGGATCACCTGTCAGCAACAACTTTATGGGCTGCTTGAAAGAGGTTGTTTACAAAAACAACGATGTAAGACTTGAGCTGTCTCGACTGGCCAAGCTGGGCGACCCAAAGATGAAGGTGAGCGGTGTGGTGGCCTTCAAATGTGAGAACGTGGCTACTCTCGACCCTGTGACTTTTGAGACGCCTGAGTCATTCATTACCCTTGACAAGTGGTCCGCCAAAAAAGCCGGCTCCATCTCTTTCGACTTCCGCACCACTGAACCCAACGGCCTGCTCCTCTTCAGCCATGGAAAACCCAAACCCCAGCAACAGAAAGACCCTAAGAGCCCTAAAACATTGAAGGTGGATTTCTTTGCCATTGAGATGCTGGACGGCCACCTCTACCTTCTTCTCGACATGGGCTCAGGCACCACCAAAACTAGAGCTGTCAACAAGAAAGTCAATGACGGAGAATGGTACCACGTGGACTTCCAGAGAGATGGAAGATCAGGCACCATTTCCGTCAACTCGATTCGCACTCCCTACAACGCTCCTGGTGAGAGTGAGATACTGGACCTGGACGATAAACTGTACCTGGGCGGCCTGCCAGAGGACCGGGCCGGTCTGATCTTCCCCACGGAGGTGTGGACCGCTCTCCTAAATTACGGCTATGTGGGCTGTGTGCGGGATCTGTTCATGGATGGCCAGAGCAAGGACATTCGGCGGATAGCAGAGGCTCAGAGAGCGGTCGGGGTGAAGCCGTCTTGCTCTAAAGAACCCCCCAAACAGTGTCTGAGCAACCCCTGTCTGAACAGCGGCACCTGCAGAGAGGGCTGGAACCGCTATGTGTGCGACTGCTCCGGGACGGGATATCTGGGACGCTCCTGTGAGAGAGATGCCACGATCCTCAGTTACGATGGTAGTAAGTTCATGAAGATCCAGCTGCCGGTGGTGATGCACACAGAAGCGGAGGACGTGTCCCTGCGCTTTCGTTCTCAACGGGCCTACGGTGTTCTAATGGCGACCACATCGCAAAACTCTGCTGATACTCTGAGGCTGGAGCTGGACGGAGGGCGGGTCCGACTCACTGTCAATCTAGACTGTATCAGGATAAACTGTACTACCAGTAAAGGTCCAGAGACCATATTTTCGGGCCAGAACTTGAATGACAACGAATGGCACACAGTTCGTGTCGTCAGAAGAGGCAAAAGTCTAAAGCTGATGGTGGACGACTTGCAGCCCTCTGAAGGTCAAATCACTGGGGACCACACGCAGCTGGAGTTCCACAATGTGGAAACGGGCATCGTTACCGAGAAGCGCTACATGCCCGCTGTGCCCTCCAACTTCATCGGACACCTGCAGGGTTTGTCCTTCAATGGCATGTCCTACATTGACTTGTGCAAGAACGGCGATATCGACTACTGCGAACTGAACGCCATGATCGGCTACAGGAGCATCGTGGCAGACCCAGTGACCTTCAAGTCTCGCTCCAGCTATGTGACTTTGCCCACCCTGCAGGCCTACTATTCGATGCACCTCTTCTTCCAGTTTAAGACTACTTCTCCAGATGGGCTCATCCTGTACAACCGAGGAGATGGCAATGACTTTATAGTGGTAGAGCTGGTTAAAGGATATCTCCATTACGTGTCAGATCTGGGAAATGGAGCTCATCTCATCAAAGGCAATTCCAACACACCGCTAAATGACAATCACTGGCACAACGTGATGATCTCGCGAGATACAAACAACCTCCATACTGTCAAAATAGACACCAAAATCACCACACAGACTACCATGGGAGCCAAGAACCTGGATCTGAAAGGTGATCTGTATGTTGGAGGTGTGGCTAAAGATATGTATAAGGACTTGCCAAAGCTGGTGCATTCAAAAGAGGGCTTCCAGGGCTGCCTGGCATCTGTGGACCTGAACGGCCGCTTGCCAGACCTGCAGTCAGACGCACTGTCCACCGCCGGCCAGGTGGAGAGAGGCTGCGAAGGCCCCAGCACTACCTGTCAGGAGGACTCCTGCTCCAATCAGGGCGTGTGTCTGCAGCAGTGGGAGGGGTTTAGTTGCGACTGCAGCATGACATCATATGGAGGGCCACTCTGCAATGACCCGGGAACCACATACATATTCGGACGTGATGGAGGGCTTATTGTGTACACATGGCCACCCAACGACAGACCGAGCACACGAGCTGACCGACTGGCTGTCGGTTTTAGTACCCAGCAGAAGGATGCAGTGCTGGTTAGGGTGGACAGCTCTTCTGGCCTGGGAGACTACCTTCAGCTTCAGATTGAAAGAGGCAATATCAAAGTGGTGTTCAATGTGGGCACCGATGACATAAACATTGAAGAAACTTCAAAGTTTGTAAATGATGGAAAGTACCACATAGTTCGCTTTACGAGAAGTGGTGGTAACGCCACCTTGCAGGTGGATGATCTGCCAGTCATTGAGCGCTACCCATCAGGCAACATTGATAACGAACGCCTGGCGATTGCTAGACAGCGAATCCCATATCGGCTTGGTCGAGTAGTTGACGATTGGCTACTCGACAAAGGTCGGCAGCTCACCATCTTCAACAGTCAGACCACCATAAAGATTGGAGGCTGGGAGAAGGGCAGCCGGCCCTTCCAGGGTCAGCTCTCAGGGCTTTACTACAATGGGCTAAAAGTACTCAACATGGCCGCTGAGGGTGACCCTAATGTGCGTGTGGAGGGTAGTGCCCGGCTGGTAGGAGACATGCCCTCCTCTTCTATCACGCCACAGTCCAGCGTCTCTGCTGCGGGAAATCGTTCAGAAACGTCACCCTCCATCACTGACATCACCACTACAACGGCGTCCAACCGCCAGGGCAAGCAGACCACAACTCCACAGGACGATCTTCTCGTAGCGTCTGCAGAATGCCCCAGCGATGATGAGGACATTGACCCTTGCGACCCAAGTTCAGCTCACCCACCACTTCCCGAGGCCAAGGGTTACCCGAGCCCAGAGGTGATTCGGGAGTCCAGCAGCACCACGGGCATGGTCGTAGGCATCGTTGCAGCCGCTGCACTCTGCATCCTAATCCTGCTCTACGCCATGTACAAATACAGAAACCGCGACGAAGGGTCTTACCACGTGGACGAGAGTCGTAACTACATTAGTAATTCTGCCACGCAGCCCAATGGAGCTGCCGTCAAAGAAAAGCCCATCGGCGtgcccaaaaataaaaaagataaaaagaacAAGGACAAGGAGTACTACGTCTGATCTCACAGACTTTCTCCCCCCTTCTTACAACCCACCCACAGATCCTGTGCTCCGAACTCACACATGAAGGGGGAGGGGAGATCCACCTGTGTATagtaattgagaaaaaaaattgaaaaagacACAACGGGTCTTAGTTTGAGCTAAGACACAATATACTCTTACTAACAACAAGAAAACATACTTTATAACCAAGCACACCAGAACTTTACTAAAGCTGGCAAGTGTGTACAAAACGAAACAGAACAGCACAAGAAGACTCCACACAGTCAACCAGTTGTGGATCGCTGAGAGACAAGGCCGCTGGTTAGAATTAAGTGTATTTCATATTATGTTGCCTGTATATGTGTTGCCGGAACATTTTTCCCCTCTACAGCCAGAAAAACCATCTGCAGCAATCCAAACGAACATTCACCAATGGGAACGGATGGAAAAGGAACTTGAGATGCTACCTATGATTGTTAAATCAGCCAAAGTATTTGACTCCCTTTTCCGATGGCAGTATTGCGCGGATGTTTGGACGAGAAAGGACAGCTCTTCCTGAAGGATCCAAACTGATTTCCATTCGGTGGATAAAACCCTTGGTGTCAAAGAGAATTGTGGAGGCCTTAAAAATCAAACCAAGTGTAAAGGTTGTTGGATTTTCTTCTGTTTGTATGCGTCAAAACAATGACAGACGACGCTGATGACGAAAAAGAGGAATACCGGGGCCATTCGGAATAGATTGAGGAAAAACTCCATGCACGTAAAGTATCTTATTACATGTTTATATACGGTGCAAAGACTATCTGTGTGCTCTCTGGACTGTGGCTGAAGTGGTGTTTTATAGCCTGTTATATAGATGATGCCAACTACAGTATACCTGCTCttcaaattcctttttttttttctttattttccttttcttttttttctttttttagaaaaaaCCAAGGCGAAAACAAAACGAAAAACAGAAAACTAAATGTCGATGTGTTGCTATAGCGATAGAACAGTTCTGCCATTAGCTATACAGATTTGATTTTCCCTCCTTTATGTGCATCTCCAGCATCTGTTCTTTTTGACATACTCCTCctctgttttatttcatttttttcctttGGTGTGTCAACATTAAAGAGTATGGAGTATAGGTTTTGGAAAGTCAACCGAAATGTGGAACATATACGATTTTGGACTGTTTAAGCAATATCCTCTTGCTTGTCTTAGTGACCAAACAAATTATGCATGGTATTTAGGACTCCGAGTCTACCGAGAGACAATATCATAATCTCAAAAAGGTAACAAATGAATTCAGCCCTCCCAAAAAAAACTTAAGTATTGGATTAAAGCTAAAAAAGCACAAAGATCGAGAAAACAACCCCTCCAAAGTGTTTGCAAAGATTCTTCTCTCTGCTATCTTGTACTGTGTGGAATGTACAAGAGGTATAAAATATATGACATTCTGAataaaatgttgctttttgtttttgtgtgtttttttatttgtgtacaaTTTTTCTATAAtaccttcttttgtttttattgtgacaATTCTTTGATGACCTCAAAGTGAagatttattatgaaaaaaatagttttgaaaaatcaaatgaataaataaaatattaagaccTATGAATGCATTTGttctttttcttcttatttgAGGGGAATGCTACGTGGTTTCAACTTTAATACCAATCAATCTCAGAGTTTTCACATTACAATAAAAGAAAACTTTGCTGAGTCTCTTTAAAATCGCCATGTCAGTGTGACATCTGACTTTCTCGGCATCATTTTGTTCTTTACTTCatggtaataaaacaaaaaagtgctGCTTTATGatttacacaagcacacacataaaaaatCTCCCAGAGACCCATCACGATGTGCGCAGATATTGAATGAAGCCATCGATCTATCATGACAAAGAAAACACACCATTCTGTTCCTTTCGCAGAGAACAAGATGTCATGATAAAAGCTCTGGCAGAGGTGGACAGTGCTGAGACTTGGTCAGGGCGGTGGACGGTTCAGGATAGCGCCTCTTTAATTTTCTGCACAGGAGGAGGCTACGGAACAGCTGGTGTGAAATAACTACCCCTACAGGGAGGCATGCGCTGTAATTTATGATTCATGAATTATTCACACCCGCCATAGACTTTTCATCAGGCCTCATTTCAACACACTTTGCGGAGGGAGTGTGGGAGGGAGGGGCAGCTGGGCTGAAGGTTTGTCACGGCTGGCCTTGAGAAAACCTGTGATGTTTTTTCTATTTAGTCATCACAATCATCACCAAAAAACCGAAACGTGGAAAAACATGTATGGGCAAAATTCTGCCATTCAAAGACTTGATATTTGTTATACGCAGCCCTGGGTTAATAAAACGCTTTTCACTGTAGGTTTATTAAATTATTGCATTCGTTTTTCAGGACAGGATGAAAAGTCTGCGTGTCTTTCTGTACTAACATCATTCATCATGAGCTTCACCTTGAAGGTGCTATATGATTGATTTCGTGACATAGCGCCTTGAATTTAACACCCTGTTTTCTGTGGTCCTCAACTTGATGTTTTTCTCACTCAGTAAAATCGACCTGGCTTATGAACATGAAGTATGCAGTTCGGCATTCATTACCATTCTGTAAATGGTGGCttcataaggaaaaaaaaaaactcttctctGTGGCAGATTTAGTTTAATGAATGGTTCTCATTACCTGggtctataaatatatttaattaaacctAGATATGGAGACAGTTTCACATACGTTTTCAGTTCCAAAAATGGATTTGAACAAGTTTCTCATTTCCATGAAGTAGGCAAAAATAACGTCATGAAAAATTACTTAACTCACGTTTATTAACTAATTGCGATTTAGTGCTTAAAGAAGTGCTTTCAGTAAACTCTGTGCATTTATTTCACAATAGAGCTCTatagaaatattgcaaaaaaaaattcatcatgacattatgtttcatatcatttgatatccataattattgaatattttaacaatacatttactgtGGATATATTagaatttactcactttattttaatttaccaaaattccaaaggcaaatagttttaatagtcaaaatcaaaaatatttaggcaaaatttctgatctctttataataaaatactgtTAAAGAGAgttttaaacttgataaataaaaatgttacaaagtgtttGTAATGGTAAAGcgtaaatactgaacaatcaaagcaaactttaaagtagatctgtaaggtgtgaataataatgatactgtaaacctcaaactctgctTAAAAGCTCATTTGattatcatattttgttttgtttacaaaggaaccaaccatcattatttaaatacataatgGGACATTGCAAATTGTGAAGTTGACTATGACTATATTGTccctataataaaaacaaatgcacaagaaaagaaaccaaaaagccactctggcgacatccttttttatttacaatctcctcacttgCAGCATTCGGAAAAGTTCAACTATGTTTTGCTGAAAAATGCACCTGCATCACGTGTGAACAGTGCTCCTATACGCGCATTGTATAAGTCGCGCACCTCttttggaaatgacaaactttcaccctaagcttattggcactgCACATTTAATAAAACCTAGAGCACTTCATACCAaacctttttgttgttgttgttgttttttgtcgaTATTGACAATgctgttcggtcaataaatatctaTACAAATTTTAAATCGCCCAGTCCTAATAATAGATTTACAGTTTTAGTGTAAAATGTGATCCATTTACTGTATGTGCAACATTCAGTGAAAACTGTTTTTTATGTACAgtacaaaatgtctttttttactttagtttttaacagtacACAAATTCCAGTTccaataaaatacagtttactcaccctcaagagaTTCCACACCTtcatgagttttctttttttattaaacaaacaacaagGTATTTTGATGTAAGAAACCCTCAACTTTTataacaggaaaaacaaatactatgaaaaatgttGGAtacttgtaaccactgacttccaaaaTTAACTTCTTTTAAATTTAACAGAAAAAGAGTAAGGAAGAAACTGTAATTAATTGAGTGAAGGTTGAGCAAATGACAGAACTTTTAGATTTGAGTTAAGCCATCTCCCTTAGCCTGTGCACAACCTCAAAAgggtttgttttaaaaaaaaaaaaaaaatgtgatatttttacagtttttaatgcTAGTTTGTTATTTGTATTAGGTCTGCACATTATATTGTCTCAGCATCGATATTTCTAGTGTGGTATGCGTATTAAAGGAATTTCAAGAGTATTTGGCaacaaaaagtacatttgtaaCTTCAACGAAGACTAATGTTACTGAAATATTAATACAAGGACGGctacacaatgtttttttttttaacatttcccaTTTCAttcttcaatttctgtacctaacTACTTGTAattattttagcatattatttgtttgttatttttatacattatttacacCCTTACAAAAATCACTCGAGTCAATCTTaatgaatggtttctttccaaaCAGAGGTATTCAAGCTATCTGgtgaaaatgtattcatattgcaatatataaaaaaaaaataaaaaatatcccaattgcaaatttttccaatatcacacAGCC

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070206-1 Predicted to enable metal ion binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in caudal vein plexus; diencephalon; hindbrain; spinal cord; and telencephalon. Human ortholog(s) of this gene implicated in Pitt-Hopkins-like syndrome 2. Orthologous to human NRXN1 (neurexin 1).

Ensembl:

ensembl_id ENSDART00000088178

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010737 lncRNA upstream 485531 23812530 ~ 23859432 (+) False XLOC_004717
TCONS_00010736 lncRNA upstream 565786 23778952 ~ 23779177 (+) True XLOC_004716
TCONS_00010935 lncRNA upstream 693907 23649892 ~ 23651056 (+) True XLOC_004713
TCONS_00010933 lncRNA upstream 739241 23589024 ~ 23605722 (+) False XLOC_004711
TCONS_00010738 lncRNA downstream 303833 24944172 ~ 24944504 (+) True XLOC_004726
TCONS_00009368 lncRNA downstream 432966 25073305 ~ 25075120 (+) False XLOC_004728
TCONS_00010739 lncRNA downstream 433179 25073518 ~ 25075120 (+) True XLOC_004728
TCONS_00009371 lncRNA downstream 561204 25201543 ~ 25214727 (+) False XLOC_004731
TCONS_00010936 lncRNA downstream 565192 25205531 ~ 25214727 (+) False XLOC_004731
TCONS_00009352 mRNA upstream 267822 24060894 ~ 24077141 (+) True XLOC_004720
TCONS_00009350 mRNA upstream 291884 23991276 ~ 24053079 (+) False XLOC_004719
TCONS_00009351 mRNA upstream 291884 23991639 ~ 24053079 (+) True XLOC_004719
TCONS_00009348 mRNA upstream 412387 23912074 ~ 23932576 (+) False XLOC_004717
TCONS_00009346 mRNA upstream 440825 23892972 ~ 23904138 (+) False XLOC_004717
TCONS_00009365 mRNA downstream 98623 24738962 ~ 24770190 (+) True XLOC_004725
TCONS_00009367 mRNA downstream 312563 24952902 ~ 24958792 (+) False XLOC_004727
TCONS_00009366 mRNA downstream 312563 24952902 ~ 24958792 (+) True XLOC_004727
TCONS_00009369 mRNA downstream 445412 25085751 ~ 25092570 (+) True XLOC_004729
TCONS_00009370 mRNA downstream 457415 25097754 ~ 25110974 (+) True XLOC_004730
TCONS_00009353 other upstream 130446 24214401 ~ 24214517 (+) True XLOC_004721
TCONS_00009349 other upstream 412948 23923325 ~ 23932015 (+) True XLOC_004717
TCONS_00009347 other upstream 434014 23910832 ~ 23910949 (+) True XLOC_004718
TCONS_00009341 other upstream 478610 23838799 ~ 23866353 (+) False XLOC_004717
TCONS_00009336 other upstream 767572 23577266 ~ 23577391 (+) True XLOC_004712
TCONS_00009372 other downstream 583460 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009380 other downstream 827973 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009383 other downstream 1007788 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009419 other downstream 2494530 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 2516604 27156943 ~ 27163064 (+) False XLOC_004764

Expression Profile

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