RNA id: AMCG00019136


Basic Information

Item Value
RNA id AMCG00019136
length 2075
RNA type mRNA
GC content 0.49
exon number 14
gene id AMCG00019136
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5269238 ~ 5278716 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAGCGCATGTGTACAGCAGAGCCGCTGCTGCTGCGCGTATTCACGGACAGCACATCCGGAGAAAACGCATAAAGCTAATCAACTAattgtgcagtttgtgtgctTGTCGATGGCCACCACCGTCATTTATCTGCTCAGGAACGACCTACGCTTTCACGACAACGAgGTGTTGCACTGGGCTCAGAGAAATGCCGAACACATTGTGCCCCTGTATTGCTTTGATCCCAGACACTACCTGGGTACCCACTGCTATAACTTTCCAAAGACTGGCCCCTTCAGGCTCCGTTTTTTACTGGAAAGTGTGAAGGATCTGAGGGAGACATTACAGAAGAAAGGCAGGAATCTCCTGGTAAGGAAAGGGAAGCCAGAGGACGTTGTTGGTGATCTCATTAAGCAGCTGGGATCAGTAAGCGCTGTGGCTTTCCACGAGGAGGCGACAAAAGAGGAACAGGATGTAGAGAAGGCATTGAAGCAGGTGTGTTCCCAGTTTAAAGTCAAAGTTCACACCTGCTGGGGGTCAACACTTTATCACCGGGAAGATTTGCCCTTCAACCCTATTGCCAGGCTCCCAGATGTCTATACTCAGTTCAGGAAGGCGGTGGAGACTCGGAGCCGAGTGCGACCCACCATCACAATGCCTGAGCGCCTGAAGCCCCTCCCACTAGGTCTGGAGGCGGGGTCTATCCCCTCACCTGAAGATTTAGGccagacagATTGCCTGTCAGACCCACGTACAGCTTTCCCCTGCAGTGGGGGTGAGACGCAGGCCTTGGCACGGCTGAAATATTACTTCTGGGACACTAATTTAGTGGCATCCTACAAGGAGTCTCGCAACGGGCTGGCCTTAGGCTGTATATCCCCCAGGTACATTTATGAACAGATCAAGAAGTATGAGAACGAAAGAACGGCAAACCAGAGCACCTACTGggTCATCTTTGAGTTGCTCTGGAGGGATTACTTCAGATTTGTGGCAAAGTCTGTGCCCTGGAAGAAAGACAGTAAACTTTTTGACGCATGGAAAGAAGGCAGAACAGGTGTCCCATTTGTAGATGCCAACATGAGGGAGCTGGCGCTGACCGGCTTCATGTCTAATAGGGGGCGGCAGAACGTGGCCAGCTTCCTAACTAAGGACTTGGGGCTGGACTGGAGGATGGGGGCCGAGTGGTTCGAATATCTCCTGGTGGACTTTGATGTGTGCAGCAACTATGGAAACTGGCTGTACAGCGCTGGTATAGGAAATGACCCCAGAGAGAACAGGAAGTTCAATATGATCAAACAAGGCCTGGACTACGACAACAGTGGAGATTATGTGCGGCTGTGGGTCCTGGAGCTGCGGGGCATAAAGGAAGGAGATGTTCACACTCCCTGGACCCTCAGCAGTGCCGCCCTGGCCCACGCTGAGGTCTCTCTCGATGGGACCTATCCCTCGCCCATTGTCACGGCCCCAGAGTGGAGCAGGCACGTCAGGAACAAGCCAAGTGGCGGAGGAGGACCAAGTCAGAGAGGAAGAAAAGGTCCATCTCACTCCCCCAGACAGCACCGAGACCGAGGAATCGACTTCTACTTTTCGGGGAATAAGAAAGTGGACTGAGGGAACGGCTGGCCAGGGCTCCCACTGCTGTAGGTTTGGAGGGACATAGAAAAGGAGCAGCAGACAGTCAAAGTGGGCACAGGATGCTATGGCACCTACACACTGGCCTGCCTCCGGACTGTACTAAAATACAGCAAGGTTTATCTGTTTTATTAGTGTTGGTGAAGCTGCTaagttttgcatttatgttttcctgtttttttgtttcttttgttttgggcAGTCATGGTGGTGCACTACAGATATGACAGGAAAGATTACAAAAGgcataaacatatttatattcgggtttttttttaaagatgcatgttttttctgttatttccgTTAAAAAATCTGTgagttgtatttgttgtttcttGCAGGACCAGATAAGCAACAATACAGTTATTACTCCATTCTGTGGTGACTGCAATGTtctctgtgaaatgtatttttaagtcaaaccaattattttgttattaaaaagcCTTCAATGCTGAA

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0003913 DNA photolyase activity molecular_function

KEGG:

id description
K01669 phrB; deoxyribodipyrimidine photo-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39592 lncRNA downstream 282854 4941059 ~ 4986384 (-) True AMCG00019128
TU39509 lncRNA downstream 591171 4677643 ~ 4678067 (-) True G31572
TU39494 lncRNA downstream 661381 4607563 ~ 4607857 (-) True G31558
TU39459 lncRNA downstream 903837 4365162 ~ 4365401 (-) True G31526
TU39458 lncRNA downstream 904194 4364196 ~ 4365044 (-) True G31525
TU39751 lncRNA upstream 140280 5418996 ~ 5511930 (-) True G31774
TU39752 lncRNA upstream 140280 5418996 ~ 5444209 (-) False G31774
TU39766 lncRNA upstream 261404 5540120 ~ 5540948 (-) True G31784
TU39790 lncRNA upstream 294081 5572797 ~ 5574265 (-) True G31803
TU39830 lncRNA upstream 471171 5749887 ~ 5752086 (-) True G31825
AMCG00019135 mRNA downstream 1594 5261715 ~ 5267644 (-) True AMCG00019135
AMCG00019138 mRNA downstream 25524 5236401 ~ 5243714 (-) True AMCG00019138
AMCG00019134 mRNA downstream 66872 5177893 ~ 5202366 (-) True AMCG00019134
AMCG00019137 mRNA downstream 92294 5171620 ~ 5176944 (-) True AMCG00019137
AMCG00019130 mRNA downstream 262794 4989723 ~ 5006444 (-) True AMCG00019130
AMCG00019142 mRNA upstream 47325 5326041 ~ 5349514 (-) True AMCG00019142
AMCG00019144 mRNA upstream 112349 5391065 ~ 5405706 (-) True AMCG00019144
AMCG00019145 mRNA upstream 141265 5419981 ~ 5436120 (-) True AMCG00019145
AMCG00019149 mRNA upstream 303512 5582228 ~ 5588342 (-) True AMCG00019149
AMCG00019150 mRNA upstream 356986 5635702 ~ 5671986 (-) True AMCG00019150
TU39603 other downstream 333242 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 3090588 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 3185967 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 3185967 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 3558695 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 8383400 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 9213175 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 9213175 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 9673126 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 10413766 15692482 ~ 15721452 (-) True G33381

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046279 True 2045 mRNA 0.46 14 NC_007135.7 20194022 ~ 20208474 (-)