RNA id: TU46406


Basic Information

Item Value
RNA id TU46406
length 4540
lncRNA type read_through
GC content 0.45
exon number 3
gene id G37135
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44329019 ~ 44334697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAACAAGTAGAAACATCTCGTGTAGGATTGACATatgctgatgatgatatttATATACTGGGGGAAGGGGACTTATTTTAGGTTTTAATCCGACAATGTCTGTAagagtttatatttatttaaaaggtcATTGATTTAGTTGATGCCTtgtatgttctctctctctctacctggACTGCAGCAGCACTGCCCCCACGAAGTCTAGCACTGCTGGACTGGGACTCCTCTCGGACCAGCAGCGGCAGATCCTCCATCACCagcaccagctccagctccagcagctcTTCTCCTCCCAGCAGTCTATACCGgaGCAGCACCAGGCCCTTCTGTACCAGTTaatacagcagcagcaccagcagcagcagctctcaGCGGCTGCCCAGCTGCCCATCAGCAGCCTCCTGCCCTCCGCACAGGGCGCCATGTCCAGCAACCCCTTCCTGGCCCTGCACACTGACCCATCCGCCCAGAAAGCACCTGTAAGCTCCCGACTGCCCGCCCCTGCGCCGGGCCTTAAGAAACCCCACTGCCGCTTCACACTAGAGAAAACGTTGTAACAAAATGGGGTCCCGTCGGGCTGCCAGGACTGCGGTCAGAATGAGGACAGAACAGGAAAAACATCCTCTCTATTAAACATGggtctttcattcattcatttgacCCTCTTGTCAGAATCCAGCCAGTGGTTTTCACCATGAGTTGAACTGCTGGATCTGTTTAATGACAGTTTTGTTTAATGGAGACTATTAAGATCATCTTCCAGAGCTGGAGGGAGGAGATCTGCAAATTCAGTGTCAAAATGTTTGGCTCCTGAGGGATTATAAGTCAAATTGAGGGTGGGGGGATagctgtataaataaacaaacctcaGTCTAAACTTGACTGAAATGCAGGGTGGTGCGAAAGTCCTGCCCCATTTTTAAGGCTGCTTGCAATGACTGTCCAGATTGTCGGTCATTAGCTCAGCAGCTCTCTGATTGGGTAAATCTGTGATGCCCACGCCCGTCTCCGCACTTTGGCGCTGGTCTGGAGACACTTGACCCTTCTGCTCGCCATCGTTCGGTCACAGGCCCTTCTGGATGCCGTTTTTTACCATCTGCAGAAGCACCGGGCAAACTCCCCTCACTGCCCCTCTCCGCCGGGGGAATCCTGCAGCACTCACAACCCGTGAAGAAAACCCAAATCTTTACCTTTGAAAATCCCTATGGGGCATCACTTTTGCACCACCTTGTATACCGAGTTCCTCTAAGTGAGGGGGCAGTAGTGCGAGGCCTGCAGTGGGATGGGGCGCAAGGTGGCGCTGCACTAAGACGGTCTGCGGACGCTCCGAGAGCCCTCCCCACCACCAGTATTCAAACCAAACATTTCTCATGCAGACAGCAGCCAGACAGTTAGTGACACTAAAGGCAATGCTGCCTACATTACTCTCACTGGACTTGGAAAACATGTCaatagtaatatttttttttcttttttttttttttttttctttgtccttttgtttttccagcgACTAACAGAGAAATCTGGACCAGTCACACAGGAGAAGAGCTGACAGAGGGGGTTTATGTGCCTGCAGTAGGATAGCACTTGTCCAGCCTATCTCTCAAGTGTAATCCACCCTTGACCAAAACTCAAGGCAGTTCCTTAAAGAGGAGGGAAAGGATTTCAGGCTTTACTTGACATTCCTCAAAGGCATGGGactgaaataaacataaatgtcACTTTCTTGCACTAAAATTGGAATTAATCACTTAATGTATTTCAGGGACTGCagagaaaaactacaaaaaagtgTTCAATAGAGTTCagctttatttatacaaaaatacgaattgtgtcaaaagccagAGTGAGGTTTTGTGCTGAACAGACTGGGCTGGGTTTATGTCTCAGTTGGAAGGATGCTGCAAAATGGACTTGCTGTGGTGTGGAGTGTGAAGCTCTGCACACGTGTGCTTTGTGCGCTTTACTCTGCCCATCCCTATAAGCTCTGTTGGGGTGTGTTTGGGTTTCAGTAAAAGAAAGACTGTGCGAAGTTCAGGGCAGTGTCCCTccagactggagctgcagttGCTTCGGAGGCTGGGAACAGCGCAGTGCGAGGCACTATAGCTCGGCTCGCCCCTGACTGACGGCCGGCCGAGAGCCACTGCAGTCCTGGGAGTGGCCGCCTGCCCCACGCTCCTCTGCCTGTGCCATGGCCTCCGGTGCCCGGGGCTTTAAGAGTCTGGGCAGCTGCTGGTGAACAAAAGGAGAAGAGCTGGATCTTGCTGTTGCGAAGGGAGCGTTCCTTTGAGAGGAGAGGAATCTCCGAAGCCTCGACCCAAGTGCCTGTTGCTAAGTCCATTGTTCAGGAGCTCGCTGTGGGGCTCGGGACAGGTCCGCCTGCTCTCCACACAATCCCTGTCAGAGATGTTCCAGTCCACCACCACCCCACTCACAGATTCTCAAAGATAGTGTGTGTCGCTCAGGCAATATACAACATGACATCCAGGTTCTCACTCACTTTGCCttgtaagtttaaaaaaaaaaaaaagaaaaaaaaaaaggtattgaATCTGTTCGGTCTGCGATTTCACTGTGCTGGAAGCGGgagttttgtttcctttttaatttattgatctGTTGTAAGATGGGCGTGAGATAATATATTTGAGAAGAGCCCAGAATTGTTCATTGTAGAGAATCGAGAGGTCTTTTCTACTGCTATACAATTTTGTTCAAAGACATGTGAAGCTTGCATCATTGTGTAACATACATCGACCACCTTTTCAAGAAAGATCAAATATATcccaggaaaaataaacaatattcattaaaactaaagcaaaactaCATTTTGAACTGGTGGACAGTTAGAAAATTGTTACCCATGTAAATTATTTAGTTCATCCACTGTGTACAGAGCTAACACTGCATTTTGGATTATAACAACCTTGAAAGGGTTAAATTGCACAGTTTTACCTCTTCTCTGTAAATACTTGTTTGTAATTCTCCTTGGTGTTGTGAAGAATTCTTAATGCAACCTCgatttttgctttaaaatatttctatcAGCCATTTGAGCAATGACTGGcaacaaagtattaatttatttttatatatgcagGGAAATTTTAAAAGTCTGGCACCGATTTTCTTGAATCTAAATGTAGTGTGCTTCCTTTTGGCCTGTCAGTTTCTCAGTTGCATACCAATCTTTGTACAGCATTCAAGCCTCAAGGAGTTTATATTTCACACAAATACACCAAAACAGGTTTTTAAGAGTTTtgtaagaagaaaaatgttgatttatattACGAGTTCATAGCAAAGGAactttttgttaaatattgattgtttctgTAGTGTAAAGCAATTTTTccaaaatgataaattaaaagcaatttacttgttttatttgtctgctATTTAACAGAGTGATTATAAAATCTTCCTACCTCTGCCTTTGGTGTTAAACTCTTTTACTTCTTACTTGAAAACCACTGATGCTGTGCAGACACTTCAGTAAAGGTTTTAACctgtttttctccccttttaTTGTTTACTACTGAATAGAAAAAGTTTGCCACAGCTGTTCAGGGTGCACTGTGCAGGGAGAGGGGCTCAGTCCGTTCACACCCTTTAGAGCACGGGCTCTGAAGAAGATCTACAGGGGATGTTTCCGTGATGGGGAAACAAGGATGTCGCAGTTTTTGTAAATGCACGTTGGCGTGATCACAGGTTACATGTGAGTTTTGGTTGTCTAACCAGCCTGCAGGGGGAGTGGGGATTGGATGCTGTTTGGGATCGTCCCAATCTTGTCTCCATACCAGCCCTTTCATCTTCACTGCCACATAAAACAGTGTACAAACAAGGTCGACTTCAGATTCGAATACTGATGTCAGAGACCCCAGGCTGCTGATCACAGGGCCGGATGCCTAGCTGTCCCGCACCCACCCTTCATCGATGTGCCCTGTGCTCAGCAGCCTGGGCTGCTCCTGCTCGTGGCAGGGGCACTACCGTTTCCCATTGCTGAAGATGTAACCAGGGTTTATATTTCAGTATCAGTGCAAAATAGTATTAGCCTGAACAaagataaatgtatacattttctaattatgcactgtattcaattaaaattacattaaggATTTCCAACAAAAATGCTTCTCTTGGTTAACAAGTAAACATTGTTCTCcccattcttaaaaataataatataatgaaattatgtaaaacaaataatttttcCTGTTCCAAGAACCTTGCTGTTCACAATCACACTTCACCATCGCATTTCACAATCACCACGCTGCTCACTTGCACTGCCAGATGATCGCTGGCTGTTCTTCCCCATTTTAGGGGAGTTCTGGAATATCCTTTATTTCATATTTGGAGGGGGAAAACAATATAATGGGAGGTTTAAGGGGGAAAATAATGCTTAGGAAAAAGTTTTTCTGATGTATATATAGGTTTTTACATTAACCAAAGCTGCATACAACTAACAGGATGCCAAAAGACTGCAATCAAAGCctttttaactaaaataaactg

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46393 lncRNA upstream 40650 44236214 ~ 44288369 (+) True G37132
TU46354 lncRNA upstream 277588 44046329 ~ 44051431 (+) True G37102
TU46318 lncRNA upstream 394700 43934103 ~ 43934319 (+) True G37070
TU46314 lncRNA upstream 414200 43914192 ~ 43914819 (+) False G37068
TU46448 lncRNA downstream 69895 44404592 ~ 44406930 (+) True G37168
TU46453 lncRNA downstream 101402 44436099 ~ 44443701 (+) False AMCG00019785
TU46484 lncRNA downstream 180271 44514968 ~ 44517929 (+) True G37199
TU46527 lncRNA downstream 446420 44781117 ~ 44781942 (+) True G37231
TU46565 lncRNA downstream 517087 44851784 ~ 44854518 (+) True G37268
AMCG00019784 mRNA upstream 59806 44266241 ~ 44269213 (+) True AMCG00019784
AMCG00019775 mRNA upstream 258362 44060525 ~ 44070657 (+) True AMCG00019775
AMCG00019773 mRNA upstream 284344 44014510 ~ 44044675 (+) True AMCG00019773
AMCG00019770 mRNA upstream 364751 43949035 ~ 43964268 (+) True AMCG00019770
AMCG00019767 mRNA upstream 623934 43702543 ~ 43705085 (+) True AMCG00019767
AMCG00019785 mRNA downstream 101225 44435922 ~ 44443756 (+) True AMCG00019785
AMCG00019786 mRNA downstream 110194 44444891 ~ 44453292 (+) True AMCG00019786
AMCG00019787 mRNA downstream 144765 44479462 ~ 44497485 (+) True AMCG00019787
AMCG00019793 mRNA downstream 275320 44610017 ~ 44637909 (+) True AMCG00019793
AMCG00019791 mRNA downstream 350794 44685491 ~ 44694369 (+) True AMCG00019791
TU46357 other upstream 272416 44053074 ~ 44056603 (+) True G37105
TU46181 other upstream 995706 43330292 ~ 43333313 (+) True G36954
TU46165 other upstream 1058134 43261894 ~ 43270885 (+) False AMCG00019758
TU46131 other upstream 1366361 42960656 ~ 42962658 (+) True AMCG00019755
TU46002 other upstream 1770083 42556540 ~ 42558936 (+) True AMCG00019747
TU46693 other downstream 944758 45279455 ~ 45339619 (+) False G37372
TU46904 other downstream 2456330 46791027 ~ 46791485 (+) True G37561
TU47161 other downstream 4115931 48450628 ~ 48451167 (+) True G37779
TU47362 other downstream 5223785 49558482 ~ 49561383 (+) True G37962
TU47365 other downstream 5228197 49562894 ~ 49563214 (+) True G37964

Expression Profile