RNA id: TU46448


Basic Information

Item Value
RNA id TU46448
length 1987
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G37168
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44404592 ~ 44406930 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCAAGAGCACCGGGGGTAGGCCTCAAGCCTGgggttttccagagctgtacgaCTAATCCCCGCAGTCGTCTTGAACACATACGGGAGCGTTTCAATCGCGGCTGGAGAGCCCAGTGGAAACGCACACAAGGCGGCTCAGGGAGGCTGCGGCGGCGCCCGGCTATGAATGACACTTTTGCTGCGCGCCTGGAAAGAAGCTCAGAGCCACTGCGAGAAGAAGCTGCCGACACGCGTGGGTGTCTCATCACACGCAACACGGATACTTTGTAACTGACGTCTCGCAGCCGACATCGATACTTTGTTATCAGCAGTTCGCTCGCGTCGCACGCTTCTTCAGCAGCCATCTGCTCCGGGAGAAatcacacaccagcacagcGGAAGTCCAGCCCTCCACCGACATGCACCCGCACACAGCAACTTCGCCAAGGCGAGCAGCACAAATAAACCGTGGAAGGGGATTACCTGCTCCACGCCGAGGAACTCGTAAAAGTTCTGCGGGATTTCCTCCACCAGGTCGTAGAGCTCCCAGTCGGTCTCCGCGTACAAAGGCGCAGGGGTGGCAATGAAGAGGAGGAAGACCGTGTATAACGCCGAGCCGCGTCCAGCCATGTTCGGGGTCTTTGGCCGTGTCGGTAACTGCACCGGTGCCCCTCCACAAGAGTTTGTGCAAGGTATTCATCAGGCTGTGAGCTTTAACTCTGGGAGCTGCAGGGAGTTTAGCTCACCGTTGCTTTCGGTCAAGGTAAGATTGACTGTCCTCTTTCCCCTGGAAACGATCTGCATCACATCTGTCTCATTACACCGCTTTTAATGGATTGACTGTCCTTAAAATCAGGATCTGCGGTGAAAAGGACTCGTTAACTGTTCTCCGATCACTGTCAGTAAAGCCATTGCAGTAGAAGTGTGTGTTTAGtatttgcatttctgtacattttgcttCCATATTTGAATGAAGTTGTGAATGCTACGTTTGTTAAATCACAACACGTACAGCCAATTCTGAAGCAAAATAACTCTCGAATGAAGCCAGTGATTTGGTGTATTCCTGATAAAAAGCATATTTAGATTTAAACGACACTTTCTACCCTGTCCACATAGGCCTACACCAGCAATGAACTGTATTAAATAAGTCATTACAATTAAACCCTGATCATAAACACTGAATCAAATATCGACAACTTAAACTAACACACAAAGCATGGCTTTTGAGGTTTTCTTCAAGGGTTAGAGCAATCAATTTATGAGAAATCATcctaatgcaaaaacaaaaagtactcCTAATAGTTTTTTGAAGAAACTACATCTTTCATATTGAAGGGACCaattgtacatgtatttttttttttattttagcactTGCTTTGCAGTAGTTTTTTAGGActagttaagaaaaaaaaaatggctgtattttgaaatgtacagacTGCTAGTTGACTTATTTTTGACACATCAATTGTGGATTCTCTCATACACCTTAATACATGTTACAGATTTGTACATTAAAGCAGAAGCATATAACCCCCTTTCTGTAAAATCTCCATGGGCTgctttttacataaataatagagGAATTGTTCTATTCCTCACATGCTAGGCCTTATCTGTGTGAACTGAAAAAGCTTTCACTTGAAAGCTTGGCACTGCATTTTGCTAAGAATCCTACCTTGTCAACATACATCGTGTATAGCTATGTTTAATGACAGTTTGTTTGGGACTTTATCTTGGGGGGGCTATTGCCTTGCCCTGcacaacacatacacatggAGTATTTCTGccttatttatgtaataaaataggACCCAAGactttgtttctgcttttgtttaacAAGTCTGATAACATTTTGGTTTACAATGCCTAGAGGCTTTATATGCACAGGATGGGCCATTTATATCTGACATGGAAGTAGACCTGTTATACTGTGACACAATTTCCCATGCTTGTACTGACTTGAACGatgttaattgtaattatataaataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46406 lncRNA upstream 69895 44329019 ~ 44334697 (+) True G37135
TU46393 lncRNA upstream 116223 44236214 ~ 44288369 (+) True G37132
TU46354 lncRNA upstream 353161 44046329 ~ 44051431 (+) True G37102
TU46318 lncRNA upstream 470273 43934103 ~ 43934319 (+) True G37070
TU46315 lncRNA upstream 489773 43914192 ~ 43914819 (+) False G37068
TU46453 lncRNA downstream 29169 44436099 ~ 44443701 (+) False AMCG00019785
TU46484 lncRNA downstream 108038 44514968 ~ 44517929 (+) True G37199
TU46527 lncRNA downstream 374187 44781117 ~ 44781942 (+) True G37231
TU46565 lncRNA downstream 444854 44851784 ~ 44854518 (+) True G37268
TU46572 lncRNA downstream 477876 44884806 ~ 44936756 (+) True G37274
AMCG00019781 mRNA upstream 65477 44332645 ~ 44339115 (+) True AMCG00019781
AMCG00019780 mRNA upstream 72444 44276851 ~ 44332148 (+) True AMCG00019780
AMCG00019784 mRNA upstream 135379 44266241 ~ 44269213 (+) True AMCG00019784
AMCG00019775 mRNA upstream 333935 44060525 ~ 44070657 (+) True AMCG00019775
AMCG00019773 mRNA upstream 359917 44014510 ~ 44044675 (+) True AMCG00019773
AMCG00019785 mRNA downstream 28992 44435922 ~ 44443756 (+) True AMCG00019785
AMCG00019786 mRNA downstream 37961 44444891 ~ 44453292 (+) True AMCG00019786
AMCG00019787 mRNA downstream 72532 44479462 ~ 44497485 (+) True AMCG00019787
AMCG00019793 mRNA downstream 203087 44610017 ~ 44637909 (+) True AMCG00019793
AMCG00019791 mRNA downstream 278561 44685491 ~ 44694369 (+) True AMCG00019791
TU46357 other upstream 347989 44053074 ~ 44056603 (+) True G37105
TU46181 other upstream 1071279 43330292 ~ 43333313 (+) True G36954
TU46165 other upstream 1133707 43261894 ~ 43270885 (+) False AMCG00019758
TU46131 other upstream 1441934 42960656 ~ 42962658 (+) True AMCG00019755
TU46002 other upstream 1845656 42556540 ~ 42558936 (+) True AMCG00019747
TU46693 other downstream 872525 45279455 ~ 45339619 (+) False G37372
TU46904 other downstream 2384097 46791027 ~ 46791485 (+) True G37561
TU47161 other downstream 4043698 48450628 ~ 48451167 (+) True G37779
TU47362 other downstream 5151552 49558482 ~ 49561383 (+) True G37962
TU47365 other downstream 5155964 49562894 ~ 49563214 (+) True G37964

Expression Profile