RNA id: AMCG00020088


Basic Information

Item Value
RNA id AMCG00020088
length 3189
RNA type mRNA
GC content 0.51
exon number 26
gene id AMCG00020088
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9400652 ~ 9444244 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCTCTTCCAGGGTACAAGTGGAATTTTACGTCAATGAAAACACCTTCAAGGAGAGACTGAAacttttcttcattaaaaaccAAAGATCAAGTTTGAGAATCCGACTCTTCAATTTCTCCTTAAAGCTGCTCACCTGTCTCCTGTACATCGTTCGGGTTCTGCTCGATGATCCCAAAGAAACCAGTGAATGGCACGTCATATTCTGGGTGAACCGAAGAGTACCAGTTTGGGCGATACAGGTTATTGTGGCCTTAATAAGTTTTTTGGAGGCTATGCTTCTCACATACTTAAGCTACAAGAAGTATTTTacaggtaatttatttttccagataTTCTGGCCTCCATTGAGGAACATCTTTATTCCGGTGTTTTTAAACTGCTGGCTGGCTAAATGTGCCCTAGAGAACATGATCAATGATTTACACAGAGCCATTCAGAGGACTCAGTCAGCCATGTTTAATCAAGTTCTTATTCTCATCTGTACTCTACTTTGTCTTGTGTTTACTGGAACGTGTGGAATTCAGCATCTAGAAAGGGCAGGCAAAAACCTCTCTCTTTTCAACTCCCTGTACTTCTGTATCGTGACGTTCTCCACTGTGGGCTACGGGGACGTCACCCCCCAGATCTGGCCCTCACAGCTGCTTGTTGTCATCATGATCTGTGTGGCTCTGGTAGTGCTCCCCTTACAGTTTGAGGAGCTAATATACCTGTGGATGGAGAGACAGAAGTCGGGTGGAAACTACAGCCGTCACCGCGCGCAGACTGAGAAACACGTGGTGCTCTGTGTCAGCTCCTTGAAAATCGACCTGCTCATGGATTTCCTCAATGAATTCTATGCACATCCGAGGTTGCAGGATTATTACGTAGTCATATTGTGCCCGACGGAGATGGACCTGCAGGTACGGCGGGTCTTGCAGATTCCTTTGTGGTCCCAAAGGGTCATTTACCTGCAGGGCTCGGCGCTGAAGGACCAGGACCTCATGAGGGCCAAAATGGATGATGCAGAAGCTTGCTTCATTTTGAGCAGTAGGAATGAGGTGGATCGCACCGCTGCTGATCATCAGACAATACTGAGAGCGTGGGCTGTCAAGGACTTTGCTCCAAATTGCCCTCTGTATGTCCAGATACTGAAGCcggaaaataaattccatgtgaAGTTTGCAGACCATGTCGTCTGTGAGGAGGAGTTCAAGTACGCCATGCTGGCCCTGAACTGCGTCTGCCCGGCCACCTCCACCCTCATCACGCTCCTAGTTCACACGTCCCGCGGGCAGGAAGGACAGCAGTCTCCCGAGCAATGGCAGAGGATGTACGGGCGCTGCTCTGGGAACGAGGTTTACCACATCAGACTGGGAGACAGCAAGTTCTTTGGGGAGTACGACGGCAAAAGCTTCACATACGCCTCTTTCCACGCCCACAAAAAGTACGGCGTGTGCTTGATAGGAGTCAAGAGGGAAGACAACAAGAGCATCCTGTTGAACCCCGGCCCCCGGCACATCATGGCTGCGTCTGACACCTGCTACTACATCAACATCACTAAGGAGGAGAACTCGGCCTTCATTTTCAAACAGGAAGAGAAGCACAAAAGAAAGGGGGTCGTTTCCGGAGGCATCTTCGACGCCCCGTCACGTCTTCCTGTTCACAGTATCATCGCTAGCATGGttaatcAGTCCACCGCTTATGGCACGGTTGCCATGGATCTGCAGAACACAGACTGCcggcccagcagcagcagcgccagCAAGTTGGCCCCGCCCACGGAAAATGGCGCGGCCAGCCGGCGACCCAGCATCGCGCCCGTCCTGGAGATCGCAGACTCCACCTCCATCCTGCCGTGTGACCTGCTGAGCGACCAATCGGAAGACGAGACCACACAGTCTGACGATGAGGGAATACCATTGCCCGAGTATGTGAAAGGATACCCTCCCAATTCGCCCTATATTGGCAGCTCTCCTACTTTATGCCATCTCCTGCCCCAAAAAGCCTCATTCTGCTGTCTGCGCTTGGACAAGGGGTGCGACCACAACAGCTTTGAAGACGCCAAGGCATATGGCTTTAAGAATAAGCTGATCATTGTTTCAGCGGAGACCGCAGGCAATGGCTTGTATAACTTTATTGTCCCCTTGCGCGCCTACTACCGCCCGAGAAAGGAACTCAACCCCATCGTTCTCCTCCTGGATAACCCCCTGGATAACCTGTTGCAATGTGGAATCATCTACGCAGACAATCTTGTTGTGGTAGACAAGGAAAGTACGATGAGTGCCGAGGAAGACTATATGGCAGACGCCAAAACCATAGTCAACGTGCAGACTATGTTCAGattgTTCCCCAGCCTCAGTATCATCACAGAGCTCACACACCCTTCCAACATGAGGTTCATGCAGTTCAGGGCCAAGGACTGCTACTCTCTCGCTCTGTCCAAACTAGAGAAGAAGGAGCGAGAGAAGGGTTCCAATCTGGCGTTTATGTTCCGTCTCCCCTTCGCTGCTGGCAGGGTCTTCAGTATCAGCATGCTGGACACGTTGCTGTATCAGATGAAGATCACAGAGGAGGACTTATGGATACGAACGTATGGGAGGttatttcaaaaactgtgttCTTCCAGTGCAGAAATCCCCATTGGGATATATAGGACGGAGTCCCACATGTTCTCCACGtctgagTCACAGGACATTTGTGCCCAGTCTCAGATCTCCATCAATGTGGAAGACTGCGAGGACACCAAGGAAGTCAAGGACAACTGGAACCCCAAAAGTACCCACAGGAACTCCACGTCCAGCGACCAATCGGAGCACCCGTTACTGCGGAAGAAGAGCATGCAGTGGGCGCGCAGGCTGAGCCGCAAAGGGAACAAGCCCACGAGCAAGACGGAGCGGATCGGCCAGCAGCGCCTCAACCTGTACCGCCGCTCGGAGAGGCAGGAGCTGTCCGAGCTCGTCAAGAACCGCATGAAGCATCTGGGCCTTCCCACCACAGGTTACGATGAAATGAACGACCACCAGAACACCCTGTCTTACGTTCTCATCAACCCCCCCCCGGACACACGGCTGGAGCTCAATGATATAGTGTACTTAATCCGATCCGATCCCCTGGCTCACGTCCCCAATGAGTCTCAGGCAGAGAAAGGCAGCTTCACAATGAAGCAAGACTTTGGGAGTGAAACCAGAGACGAGACTCAGCTCTAA

Function

GO: NA

KEGG:

id description
K04946 KCNT1, KNA1.1; potassium channel subfamily T member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76105 lncRNA downstream 97405 9269560 ~ 9303247 (-) True G60839
TU76097 lncRNA downstream 239919 9157927 ~ 9160733 (-) True G60833
TU76021 lncRNA downstream 383246 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 590759 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 601485 8798964 ~ 8799167 (-) True G60725
TU76310 lncRNA upstream 483733 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 641669 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 759595 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 1062164 10506408 ~ 10507637 (-) True G61098
TU76499 lncRNA upstream 1252374 10696618 ~ 10698099 (-) True G61136
AMCG00020087 mRNA downstream 73295 9307909 ~ 9327357 (-) True AMCG00020087
AMCG00020084 mRNA downstream 207192 9169552 ~ 9193460 (-) True AMCG00020084
AMCG00020079 mRNA downstream 233585 9162006 ~ 9167067 (-) True AMCG00020079
AMCG00020083 mRNA downstream 252341 9145242 ~ 9148311 (-) True AMCG00020083
AMCG00020080 mRNA downstream 255567 9137733 ~ 9145085 (-) True AMCG00020080
AMCG00020093 mRNA upstream 60142 9504386 ~ 9510745 (-) True AMCG00020093
AMCG00020094 mRNA upstream 98104 9542348 ~ 9547581 (-) True AMCG00020094
AMCG00020096 mRNA upstream 288739 9732983 ~ 9738219 (-) True AMCG00020096
AMCG00020097 mRNA upstream 294594 9738838 ~ 9741015 (-) True AMCG00020097
AMCG00020098 mRNA upstream 336571 9780815 ~ 9783436 (-) True AMCG00020098
TU75987 other downstream 560707 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 572543 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 1838060 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2929218 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 2934066 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 1311224 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2251447 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3040125 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 3040125 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 3046454 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038179 False 3264 mRNA 0.49 26 NC_007132.7 4875473 ~ 4922981 (-)