RNA id: TU8151



Basic Information


Item Value
RNA id TU8151
length 887
lncRNA type read_through
GC content 0.41
exon number 4
gene id G5624
representative False

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24032863 ~ 24172062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTCACTCCTCACACTTTCACTACAGCTCCACTAGGACTTACTGCTTTCTCTGAAAGCTCAGCAAACCATTGAAGCTTCTTACGTTTTATTACACCCGCAAATTAGTTATGGCCTTTTTACCCAGAGCCGTTCTCCTGCTGATGCTTGGAGCAGTTTGTATTCAACTGGTACCGAGTGCAGTCGTAGATGCTGATGGACCTGACAGGTGCTGgtgtttaaaaagtttgaaacatATCCCAAGAGAAGAGATTGAAGAGTTTTCTATTTTCCCCCGAAGATCAAAGTGTAACAAGGTTGAAATCATACTGACACTAAAACCTGTGAATAACTCAACTGAAGTGGTGAAGCGCTGCCTCGAGTCCAGAGACAAAACAAGGAATTAATCTGCAGACTTGCTGGAACAAGAAGAACGTCAACAACACCTCCACATTTAAGACATCCAGCTGCTTCGAAAGCCATCACTGAAAGAGCAGAAGAGCAGGGGAGGACAGAAGGGGGATCTGGAAACTCTAGCAAGTCTGTGAGTGGAATGTCATCCTGTCACATGACCCGGcactgaccaatcagcatccTGGGATTTAAGTGTTGGCCTCATGCAGCTGATGGGAAATCACAGAAGACCCGAGACGAAACACCCAGAGCACTGCCAGTAACCGCCGCACGCAGACGTTGTCGGCAAAAGCATTTGGATTAGAGTTCACTTGCTTTATGAATGAAGAACTGAATGTATCTTTACTCcaagcattatttaaataactatatttaaattgttttagaatttaacttattttatgtatttttgtctgACCAGGCCCTGTAATGTTATATATGTGATGTGACTGACTGAGTCACATTACAGTCTTTCTTTGACTTGACATTTTATATga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8057 lncRNA downstream 178740 23771024 ~ 23865352 (-) False LOC122351696
TU8017 lncRNA downstream 307199 23735976 ~ 23736893 (-) True G5568
TU8036 lncRNA downstream 308489 23733174 ~ 23735603 (-) True G5583
XR_006251150.1 lncRNA downstream 330635 23708413 ~ 23713457 (-) True LOC122346633
TU8030 lncRNA downstream 421211 23619700 ~ 23622881 (-) True G5577
XR_006251604.1 lncRNA upstream 10245 24175891 ~ 24177649 (-) True LOC122350488
TU8185 lncRNA upstream 28075 24193721 ~ 24251212 (-) False atp5md
TU8187 lncRNA upstream 28075 24193721 ~ 24251212 (-) False atp5md
TU8184 lncRNA upstream 53252 24218898 ~ 24220786 (-) False si:dkeyp-80c12.8
TU8186 lncRNA upstream 83026 24248672 ~ 24251212 (-) True atp5md
XM_043246219.1 mRNA downstream 2134 24040543 ~ 24041958 (-) False LOC122350023
XM_043244889.1 mRNA downstream 5436 24032892 ~ 24038656 (-) True LOC122348966
XM_043248966.1 mRNA downstream 127645 23772623 ~ 23916447 (-) False LOC122351696
XM_043248568.1 mRNA upstream 1568 24167214 ~ 24168636 (-) True LOC122351487
XM_043232803.1 mRNA upstream 52948 24218594 ~ 24221446 (-) True si:dkeyp-80c12.8
XM_043239800.1 mRNA upstream 56477 24222123 ~ 24242004 (-) True gsk3bb
XM_043239814.1 mRNA upstream 84659 24250305 ~ 24251239 (-) False atp5md
XM_043252642.1 mRNA upstream 102432 24268078 ~ 24274231 (-) True zgc:175214
TU8141 other downstream 2095 24032863 ~ 24041997 (-) False G5624
TU8148 other downstream 2095 24037345 ~ 24041997 (-) False G5624
TU8138 other downstream 2095 24040605 ~ 24041997 (-) False G5624
XR_006251553.1 other downstream 2134 24037063 ~ 24041958 (-) True LOC122350023
TU8149 other downstream 5635 24032863 ~ 24038457 (-) False G5624
TU8153 other upstream 1466 24167112 ~ 24172062 (-) False G5624
TU8136 other upstream 1739 24167385 ~ 24172062 (-) False G5624
TU8137 other upstream 1739 24167385 ~ 24172062 (-) False G5624
TU8161 other upstream 1739 24167385 ~ 24168688 (-) False G5624
TU8132 other upstream 4684 24170330 ~ 24172062 (-) False G5624

Expression Profile