RNA id: XM_043256901.1


Basic Information

Item Value
RNA id XM_043256901.1
length 2644
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC122357494
representative True

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 26202853 ~ 26209478 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTACACACATGCTCAAACTTAGGACCAGGAAATGCGTAAGATCATGGAAAGAGAAACCGAAAGTTAAGTTGAGCcgttgtgtgtgtctgtctctatACTCAAGCAGTAAAATGGCAGAATCCAGAGTTTTTCAGGATGAGTTCTTGTGTCCGGTGTGTCTGGATCTTCTGAAGGATCCGGTGACCATCCAGTGTGGACACAGTTACTGTAAGAGCTGTATTACAGACTGCTGGGATCAGGAGGATGAGAAGAGCGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCAGCACAAGACCCGCTTTAGCTAGAAACGCCATACTGGCTGAAGTGGTGGAGAAACTGAAGATGAACAAACTCTCTGCTGACTGTGACCCTGGAGCTGGAGATGTTCAGTGTGACGTctgtacagaaagaaaatacaaagcCGTCAAGTCCTGTCTGGTGTGTCTGGAGTCTTACTGTCAGAATCATCTCGAGCAACATGAGAGTTGGTTTAAAGGAAAGGAACACAATCTGACCGAAGCCACTGGACGACTGCAGGAGATGATCTGCCAGAAACACAAGAAGATCCTGGAGGTTTTCTGTCGCACTGATCAGAAGTGTATATGTATGATGTGTATGATGGATGAACACAAAAACCATGATACTGTATTAGCTGCAGACCAGAGGACAGAGAACCAGAATCAGCTGAAGGAGACTCAGAAGACGCTCCAGCAGAGAGtccagcagagagagaaagatctcCAGCGGCTGAGAGAGACTGTGGAGTCTCATAAGCGCTCTGCACAGACAGCAGTGGAGGACAGTGAGAAGATCTTTACTGGGCTCATCCGCTCATTTAAGAGAAGACGCTTTGAGCTGATAGAGCTGATCAGAGATCAGGAAAAGCAAGCAGTGAGTCGAGCTGAAGGACAACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAAGAGAAGAGACGCTGAGCTGGagcagctttcacacacacaggatcaAATCCAGTTCCTGCAGAGTTTCCGGTCTCTTTCAGCACCTCCTGAACCTACAGATGGAAATGACGATCCCTTTgcttctctcttcttttctgaTGACCTGAAAAAATCTGTACATAAACTGACAGACAAACTGGAGAATTTCTGCAAAGAGGAGCTCAAGAAGATCTCAGGCAAATTCAACATTGTTCAAAGAACCAGGAAGGACTTCCTACGATATTACTATTGGCCCACTCTGGATCTGAACACCATCAATAAACACCTCCATCTGTCAGAGAACAACAGAGAGATTTCTCACATTTACACAGAGCAGtcatatcctgatcatccagacagatttgatgtgTATCGTCAGGTGTTGTGTAGCGAGAGTGTGcgtggacgctgttactgggagctGGAGTGGACTGGAAGTAATGGTGTGcgtatatcagtgtcatataagagcATCAGCAGGAAGGGAGGTGTAGAGAGTTTGTTTGGatctaatgatcagtcctggaatttgctttgttttccaTATAAATACTCATTTTGGCACAACAAGATACAGACTGCTCTCCCTGTAGAGTCCATCAGCAGTAGAGTAGGAGTGTTTGTGGATCACGgagcaggaactctgtccttctacagcgtctctgacaccATGACCCTCATCCACaaagtccagaccacattcactcaggaGCTCTATCCTGGGTTTGGGTTTGGAGCGGGATCATCGGTGAAACTGATAAACTGTTTTGAGGAATCAGAATAGATTGACAAGAGGTTCTAGCGGGTCCAAAGCCAGCCACGagtgtttcattttcaaaatgtttttttctttctctaaatgactaatttgcttttaaactcCTCTAATGAATGTCTCTGTGACATGTATCGTTTAGTTTAGACAGTTTGCAAGAGTCTTAGTGTGTGTGCTATGAAAATGATCATTGCGAGAAGATGAGTGAGTGAGGAGATAAGAGCAGACTCTGTGTTGCCAGATCCAGCTATTATAAGCGCTTTTAGGCTTGTCTTTTCCACTTCATTTGACTTAAAAGTAGATttagggtttaggtttagggttcgTGATACCTTTGTCTCATCTTATTTGCTAAAAACAAAGTTATCAGCTATATtggttattattaaaaaaatctataacaGTAATGCATTGTTTCTTGAATAATAAACAACTGATTAAATTATCCACCCTTATTAGTATACTATTAACAAATTTTGATACAGTAAATatggtaaaattaaaatgatcatctCTCCAAATCTGTCATAAACATGTACAAGTCTCTTTTAAAGTGTTCATGATGTATATAATGAGTCGGGAGTGACCatgtttctgtgattttctcaaaatctgtttgtattgatttagtttttaatgtagAGTCACATCTATCATTTTATTACTACTATCAAAATTACTTATTAATTCAGATGATCACAGCcagttaattcatttttattttccactttATCGAGCTACTGCCCTTATCGTTTTCTTTTGTTCTCTGGTTTCACAAGacactgttttaattattgactgtgaaatttatttttaggttaCAGCTTGTTAATACTTGTTAATTCTATTATAGATCAGTGgttaaaacctttaaaagaaataaaatgtccatagtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151282 lncRNA upstream 76793 26093845 ~ 26126060 (+) True G102348
TU151286 lncRNA upstream 101010 26099662 ~ 26101843 (+) True G102352
TU151277 lncRNA upstream 112593 26085380 ~ 26090260 (+) True G102344
TU151272 lncRNA upstream 144414 26058163 ~ 26058439 (+) True G102341
TU151263 lncRNA upstream 146749 26047050 ~ 26056104 (+) True G102335
TU151335 lncRNA downstream 10756 26220234 ~ 26277550 (+) True G102385
TU151351 lncRNA downstream 25404 26234882 ~ 26236719 (+) True G102393
TU151381 lncRNA downstream 56996 26266474 ~ 26269578 (+) False G102403
TU151384 lncRNA downstream 56996 26266474 ~ 26269660 (+) True G102403
TU151415 lncRNA downstream 178468 26387946 ~ 26388699 (+) True G102423
XM_043257689.1 mRNA upstream 27119 26168657 ~ 26175734 (+) True gnrhr3
XM_043256942.1 mRNA upstream 36270 26155639 ~ 26166583 (+) True LOC122357542
XM_043257679.1 mRNA upstream 81101 26116215 ~ 26121752 (+) False eomesb
XM_043257681.1 mRNA upstream 81101 26116217 ~ 26121752 (+) False eomesb
XM_043257680.1 mRNA upstream 81101 26116219 ~ 26121752 (+) True eomesb
XM_043256902.1 mRNA downstream 2221 26211699 ~ 26215585 (+) True LOC122357495
XM_043256903.1 mRNA downstream 64693 26274171 ~ 26280161 (+) True creb3l4
XM_043257590.1 mRNA downstream 72030 26281508 ~ 26293384 (+) True clk2b
XM_043257589.1 mRNA downstream 91844 26301322 ~ 26311074 (+) True LOC122357920
XM_043258046.1 mRNA downstream 102349 26311827 ~ 26325763 (+) False pklr
TU151318 other upstream 31451 26168558 ~ 26171402 (+) False gnrhr3
TU151254 other upstream 167215 26032979 ~ 26035638 (+) True G102332
unassigned_transcript_1961 other upstream 1974605 24228177 ~ 24228248 (+) True trnae-uuc_32
TU150835 other upstream 1986090 24216243 ~ 24216763 (+) True G102017
TU150815 other upstream 2113331 24086724 ~ 24089522 (+) True tmem35
XR_006252567.1 other downstream 164855 26374333 ~ 26383634 (+) False khdc4

Expression Profile