RNA id: XM_043256902.1


Basic Information

Item Value
RNA id XM_043256902.1
length 1821
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC122357495
representative True

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 26211699 ~ 26215585 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCATGCTCAAACTTAGAACCAGGAAATGCGTTCATGGAAAGAAAACCGAAAGTTAAGTTGAGCcgttgtgtgtgtctgtctctatATTCAAGCAGTAAAATGGCAGAATCCAGAGTTTTTCAGGATGAGTTCTTGTGTCTGGTGTGTCTGGATCTCCTGAAGGATCCGGTGACCATCCAGTGTGGACACAGTTACTGTAAGAGCTGTATTACAGACTGCTGGGATCAGGAGGATGAGAAGAGCGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCAGCACAAGACCCGCTTTAGCTAGAAACGCCATACTGGCTGAAGTAGTGGAGAAACTGAAGATGAACAAACTCTCTGCTGACTGTGACGCTGAAGCTGTAGATGTTCAGTGTGACGTctgtacagaaagaaaatacaaagcCGTCAAGTCCTGTCTGGTGTGTCTGGAGTCTTACTGTCAGAATCACCTCGAGCAACATGAGAGTTGGTTTAAAGGAAAGGAACACAATCTGACCGAAGCCACTGGACGACTGCAGGAGATGATCTGCCAGAAACACAAGAAGATCCTGGAGGTTTTCTGTCGCACTGATCAGAAGTGTATATGTATGATGTGTATGATGGATGAACACAAAAACCATGATACTGTATTAGCTGCAGACCAGAGGACAGAGAACCAGAATCAGCTGAAGGAGACTCAGAAGACGCTCCAGCAGAGAGtccagcagagagagaaagatctcCAGCGGCTGAGAGAGGCTTTGGAGTCTCATAAGCGCTCTGCAGAGACAGCAGTGGAGGACAGTGAGAGGATCTTTACTAAAGTGATACGACTGATCAGAGATCAGCAGAATGCTGCAGTTTGTCGAGCTGAAGGACAACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGGAGAGACGCTGAGCTGGagcagctttcacacacacaggatcaAATCCAGTTCCTGCAGaGTTTCCAGTCTCTCTCAACACCTCCTCAGTCTACAGACATAAATGACGATCCTTCTagttctctcttctcttttgaTGCTCTGAGAGAATCTGTCTGTCAGCTTAGTGACAAACTGTATGATTTTTGCAAAGAGGAGAGCAAAAAGATCTCAGACAGAGTCCCAGTCACCAACATTGATCTCTGGACCAGGAAGGACTTCCTACAACATTCCCAGCAGCTCACTCTGGATCTGAACACTGCACATAAACGTCTCAGATTCTCTAAGAACAGAGTGATTACTAACGCTAACACAGATCAgccgtatcctgatcatccagacagatttgattatTGGcatcaggtgttgtgtagagagagtgtgtgtggacgcagTTACTGGGAGCTGGAGTGGAGAGGAGATAAAGGTGTGcgtatatcagtgtcatataagagcATCAACTGGAAGGGACGGGATCATGAGTCTCAGTTTGGAaataatgatcagtcctggagtctGTCCTGCTCTTCCTCCAGTTACTTATTCATACACAATAACAGAAAGACTGTTCTCCCTGTGAAGTCCATCAGCAGTAGAGTAGGAGTGTTTGTGGATCACGgagcaggaactctgtccttctacagcgtctctgacacaatgaCCCTCATCCACaaagtccagaccacattcactcagccGCTCTATCCTGGGTTTAATATTCATAAAggatcatcagtgaaactgtgttgattGACCCGAATAGACTGTAGAGAGCTTCTACCcataatgcttttttcttcATGACATTAATACTGCTGCTGAACAACTGTCAGTGAAATTACATGTCAGAATAAACTTCATTTAGACCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151282 lncRNA upstream 85639 26093845 ~ 26126060 (+) True G102348
TU151286 lncRNA upstream 109856 26099662 ~ 26101843 (+) True G102352
TU151277 lncRNA upstream 121439 26085380 ~ 26090260 (+) True G102344
TU151272 lncRNA upstream 153260 26058163 ~ 26058439 (+) True G102341
TU151263 lncRNA upstream 155595 26047050 ~ 26056104 (+) True G102335
TU151335 lncRNA downstream 4649 26220234 ~ 26277550 (+) True G102385
TU151351 lncRNA downstream 19297 26234882 ~ 26236719 (+) True G102393
TU151381 lncRNA downstream 50889 26266474 ~ 26269578 (+) False G102403
TU151384 lncRNA downstream 50889 26266474 ~ 26269660 (+) True G102403
TU151415 lncRNA downstream 172361 26387946 ~ 26388699 (+) True G102423
XM_043256901.1 mRNA upstream 2221 26202853 ~ 26209478 (+) True LOC122357494
XM_043257689.1 mRNA upstream 35965 26168657 ~ 26175734 (+) True gnrhr3
XM_043256942.1 mRNA upstream 45116 26155639 ~ 26166583 (+) True LOC122357542
XM_043257679.1 mRNA upstream 89947 26116215 ~ 26121752 (+) False eomesb
XM_043256903.1 mRNA downstream 58586 26274171 ~ 26280161 (+) True creb3l4
XM_043257590.1 mRNA downstream 65923 26281508 ~ 26293384 (+) True clk2b
XM_043257589.1 mRNA downstream 85737 26301322 ~ 26311074 (+) True LOC122357920
XM_043258046.1 mRNA downstream 96242 26311827 ~ 26325763 (+) False pklr
XM_043258045.1 mRNA downstream 97296 26312881 ~ 26325763 (+) True pklr
TU151318 other upstream 40297 26168558 ~ 26171402 (+) False gnrhr3
TU151254 other upstream 176061 26032979 ~ 26035638 (+) True G102332
unassigned_transcript_1961 other upstream 1983451 24228177 ~ 24228248 (+) True trnae-uuc_32
TU150835 other upstream 1994936 24216243 ~ 24216763 (+) True G102017
TU150815 other upstream 2122177 24086724 ~ 24089522 (+) True tmem35
XR_006252567.1 other downstream 158748 26374333 ~ 26383634 (+) False khdc4

Expression Profile