RNA id: TCONS_00017604


Basic Information

Item Value
RNA id TCONS_00017604
length 886
lncRNA type retained_intron
GC content 0.43
exon number 2
gene id XLOC_008914
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1589813 ~ 1590858 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACAGACGCAGAGATGGACAGCGATTCAGCAAGCAGCGTTTACAGCGGATCTCAGAGCTCTGTGGAGGTGAAGGATCTCTCTCCTCCATTTTATCAGTTTAAAGCTTTCATGCCTGTGGATGAAGGTGAAGATGCTCCAGACGAGGCCAATATTAAAGTCTCACAAAGGTATTATTCTGTTCTACATGACTAACTGTATTTGAGTAAACAAACGACTAATAAACACACCACTGTGCCTGacacaaacactgcactgaaACTGGACTGTTGTCATCCTAAATCAGGTGCTCTTGTGGAAACTGCAGACTCACTCCAGAGGAAAACGTTTGTTGTAGAGACATACCACAGGTGAAGCACAAATGTGGCCAGGTTAACGTATGTTGCATAACAAACCACCCGGGGTTTGAGCTTGTCACTCTGAACCCAGACGTCCTGCAGGTGTCTTATTGCAGATATCAGGATGTTTATGGGAAGACACTCCCAGATCTCAACAGGTTGGTTTTAAAGATCCATCACTGTGCTCTGTCGCTTCAGTAACATTATAATGAAGTCTGCTACCGAACGTTAATGCATCTTATGTTTATTATCTCCATTTCTCCTATCAAACCTCATGTAAATTGAGCAACATCTGACCTGACCTGTGTTTCATTCAGCCGTAACAGACACCTGGCATGTTTAAATTTCATCTTCTTGTGCTGGAGCGATGTGGGGCAACAGACCAGAGCGGTGATTCCCTCATGTGTTGCTGGAAGAATGAGACAGAAACTCCCAGAAGGAAACGAAAACTACAATGGTTTATTTCCCCGTCCACTTTAGGAGAAGACTTCTGTACTGAATCACGTGTGCTGTAAAATGCTTCAAAATAAACTTGCGTACACAACAAA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0009799 specification of symmetry biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0035239 tube morphogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072102 glomerulus morphogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:1905330 regulation of morphogenesis of an epithelium biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0033504 floor plate development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0040017 positive regulation of locomotion biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0039019 pronephric nephron development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0039021 pronephric glomerulus development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0021999 neural plate anterior/posterior regionalization biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030128-1 Is expressed in forerunner cell group and shield.

Ensembl:

ensembl_id ENSDART00000154160

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017602 lncRNA downstream 55594 1523472 ~ 1534219 (-) True XLOC_008912
TCONS_00019111 lncRNA downstream 446744 1140445 ~ 1143069 (-) True XLOC_008908
TCONS_00019110 lncRNA downstream 581454 1007600 ~ 1008359 (-) True XLOC_008903
TCONS_00019109 lncRNA downstream 596226 986144 ~ 993587 (-) True XLOC_008902
TCONS_00019108 lncRNA downstream 596273 986144 ~ 993540 (-) False XLOC_008902
TCONS_00017607 lncRNA upstream 16054 1606849 ~ 1611693 (-) False XLOC_008915
TCONS_00017613 lncRNA upstream 130792 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00017624 lncRNA upstream 239475 1830270 ~ 1834822 (-) False XLOC_008922
TCONS_00017629 lncRNA upstream 264228 1855023 ~ 1885239 (-) True XLOC_008923
TCONS_00017640 lncRNA upstream 732871 2323666 ~ 2328145 (-) False XLOC_008928
TCONS_00017603 mRNA downstream 5676 1574356 ~ 1584137 (-) True XLOC_008913
TCONS_00017600 mRNA downstream 55555 1494493 ~ 1534258 (-) False XLOC_008912
TCONS_00017601 mRNA downstream 55581 1494497 ~ 1534232 (-) False XLOC_008912
TCONS_00017599 mRNA downstream 104727 1453536 ~ 1485086 (-) True XLOC_008911
TCONS_00017598 mRNA downstream 105018 1452834 ~ 1484795 (-) False XLOC_008911
TCONS_00017606 mRNA upstream 5713 1596508 ~ 1622485 (-) False XLOC_008915
TCONS_00017608 mRNA upstream 19429 1610224 ~ 1622468 (-) True XLOC_008915
TCONS_00017609 mRNA upstream 40020 1630815 ~ 1651766 (-) True XLOC_008916
TCONS_00017610 mRNA upstream 89167 1679962 ~ 1687204 (-) False XLOC_008917
TCONS_00017611 mRNA upstream 89170 1679965 ~ 1687204 (-) True XLOC_008917
TCONS_00017597 other downstream 267907 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 1164057 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 1240246 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017627 other upstream 244176 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 675174 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1034233 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1145588 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 2513613 4104408 ~ 4104526 (-) True XLOC_008968

Expression Profile

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