RNA id: TCONS_00017607


Basic Information

Item Value
RNA id TCONS_00017607
length 780
lncRNA type retained_intron
GC content 0.50
exon number 5
gene id XLOC_008915
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1596508 ~ 1622485 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgcgcgttgcctgcgccgtgagttgcgccggtcacttgacgcagaagtataaaccaggcttaagtcaaCAATTTAAGCAGATCAAAACctttaagttgtcctaaaactattgaatgACACCTATTCTCGTCTAAGGATAGTTATTCATTAACAGACATTTCACACCATACATTCCTAAACCCTGGGTGTTACAGGTGTGAAAAGTATCTTTACCTGAGGTTAAAAACAGCGTTTCGAACGATGATTGTTTGTAAAAAGATTTGCACGTTAGGTAATGAAAGTGTTTTATTATCGCAGATGCGGTTCCCCTGTTCCTGCGGCTGCTGCATTCTCCACATCAGAACGTCTGTGAGCAGGCGGTTTGGGCGTTAGGAAACATCATCGGTGATGGTCCTCAGTGCAGAGATTACGTCATCAGTCTGGGTGTGGTCAAACCACTCCTATCCTTCATCAGCCCCTCCATACCCATCACCTTCCTCCGTAACGTCACCTGGGTCATGGTCAACCTGTGCCGCCACAAGGACCCTCCCCCGCCCATGGAGACCATCCAGGAGATTCTCCCAGCGCTGTGTGTGCTGATTCACCACACTGATGTCAATATCCTTGTGGACACAGTCTGGGCGCTCTCCTATCTCACCGACGCTGGCAATGAGCAGATCCAGATGGTCATCGATTCTGGGATTGTGCCATACCTCGTACCATTACTGAGCCACCAGGAGGTCAAAGTTCAGACGGCAGCGCTGCGAGCGGTGGGGAATATTGTGACGGGAACAGATGAGC

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0015031 protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5584 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA4 (karyopherin subunit alpha 4).

Ensembl:

ensembl_id ENSDART00000149633

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017604 lncRNA downstream 16054 1589813 ~ 1590795 (-) False XLOC_008914
TCONS_00017602 lncRNA downstream 72630 1523472 ~ 1534219 (-) True XLOC_008912
TCONS_00019111 lncRNA downstream 463780 1140445 ~ 1143069 (-) True XLOC_008908
TCONS_00019110 lncRNA downstream 598490 1007600 ~ 1008359 (-) True XLOC_008903
TCONS_00019109 lncRNA downstream 613262 986144 ~ 993587 (-) True XLOC_008902
TCONS_00017613 lncRNA upstream 109894 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00017624 lncRNA upstream 218577 1830270 ~ 1834822 (-) False XLOC_008922
TCONS_00017629 lncRNA upstream 243330 1855023 ~ 1885239 (-) True XLOC_008923
TCONS_00017640 lncRNA upstream 711973 2323666 ~ 2328145 (-) False XLOC_008928
TCONS_00019112 lncRNA upstream 711973 2323666 ~ 2328284 (-) True XLOC_008928
TCONS_00017605 mRNA downstream 15991 1589813 ~ 1590858 (-) True XLOC_008914
TCONS_00017603 mRNA downstream 22712 1574356 ~ 1584137 (-) True XLOC_008913
TCONS_00017600 mRNA downstream 72591 1494493 ~ 1534258 (-) False XLOC_008912
TCONS_00017601 mRNA downstream 72617 1494497 ~ 1534232 (-) False XLOC_008912
TCONS_00017599 mRNA downstream 121763 1453536 ~ 1485086 (-) True XLOC_008911
TCONS_00017609 mRNA upstream 19122 1630815 ~ 1651766 (-) True XLOC_008916
TCONS_00017610 mRNA upstream 68269 1679962 ~ 1687204 (-) False XLOC_008917
TCONS_00017611 mRNA upstream 68272 1679965 ~ 1687204 (-) True XLOC_008917
TCONS_00017612 mRNA upstream 106975 1718668 ~ 1733235 (-) False XLOC_008918
TCONS_00017614 mRNA upstream 115798 1727491 ~ 1733259 (-) True XLOC_008918
TCONS_00017597 other downstream 284943 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017537 other downstream 1181093 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 1257282 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017627 other upstream 223278 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 654276 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1013335 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1124690 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017689 other upstream 2492715 4104408 ~ 4104526 (-) True XLOC_008968

Expression Profile

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