RNA id: CI01000299_00419297_00444862.mRNA


Basic Information

Item Value
RNA id CI01000299_00419297_00444862.mRNA
length 3534
RNA type mRNA
GC content 0.47
exon number 18
gene id CI01000299_00419297_00444862
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 419297 ~ 445888 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCCGCCCTAGAGCGCCGTGTTGCTGCTAATGGGTTTGGAGCACCTAGCCAAGCCCGGTCCAGCAATGTCCAGCGACTCTATGGAAGCCGGCTAAGTGCTAATGACCACAGCAGCCCAGTTCATATGATTGATGGTTCCACTAGTAGTGGAACGGAGTCTAGTGATACAGAGTCAGATGCAGGCAGCAACTCTTACAGTCAGCCCCTTGTCTATGGAAACCCTGGGGCAGCCAATTCCTCCCCTATGCCCCGAAGCAAGTTCTCCTTTGGCAGTCTCCAACTGGAGGACGAGGGCCAAGGAGGGAATGTGTTATATATCTCGGCAGTGTCCTCAGGCGGAAATCCCAGACTGGGATGGTGTGACTCACTCATGTCTGGATCCCGATGTGGTGCTGTCAGCCATAGTCCATTTCTAAACACAATGTGTTGTGCAGCTTCACCCCTTGGCAATGATCTTGATAAATCAAGAATCTTTACTTGTAGTGTTAAGGATAAAAATGTCAAAATTACCCTGCAGAAAAGACCAGCTTACACTGGTCCAGTTTCCAAGAGCCCTCAGCACAACGAGTCTCCGTCTGCAGGCAGGGTGATGGTAAACGGCCAGAAACAGAGTCTCAGCACTGGCCAAAGTCCAGATGGACGGCAGCCTTCTCCTCTCACCAGCCCCTTACTGACCGACGCCGGCTTCATCCGCACAGACGACGAGGACGAGGTTCGGAGGAAGAGGTTCCCAACTGATAAAGCGTACTTCATCGCCAAAGAGCTCCTGACTACAGAGAGAACATATCTGAAGGATCTGGAGGTCATCACTGTGTCCTTTCAGAAGTCCATTGGGAAGGATGAGGCTATGCCGGATTCCTTGAGAAATCTCATTTTTGCCAATTTCGAACCGGTGTACAAATTCCATGAGACCTTCCTGAAAGAGGTGGAGCAGCGACTGGCTCAGTGGGAAGGCAGATCGAACGCACACATCAAAGGAGACTATCAGCGCGTTGGGGACGTCATGCTGAAGAATATCCAGGGTTTGAAGCTGCTGACAGCTCATCTTCAGAAGCATTCAGAGGCGTTGCTGGAGCTGGAAAGGACGTGTCGCTCTTCCCGAAAGCTGGAGGGTTTGTGCCGAGACTTTGAGCTTCAGAAGGTCTGTTACCTGCCACTCAACATCTTCTTCCTGCGGCCGCTGCACCGCCTCATGCACTATAAACAGATCCTGGAGCGCCTCTGCAAACACTATCCACCGACACACGACGACTTCAGAGACTCGCGAGCTGCGCTTGCTGATATTTCTGAGATGGTTGTGCAGCTTCACGGCACTCTCTTTAAGATGGAGAACTTCCAGAAACTTCTGGAGCTCAAGAAAGACCTCATTGGCGTCGACAATCTCGCCATTCCTGGACGGGAGTTTATCAGGCTTGGTTGTCTCAGCAAACTCTCTGGAAAAGGTCTACAGCAGAGAATGTTCTTCCTGTTCAATGATGTTCTGATGTACTCGAGTCGAGGGATGACGGCCTCTAATCAGTTCAAAGTGCACGGACAACTTCCTCTTTATGGCATGACGATCCGTGAGAGTGAGGACGAGTGGGGCGTCCCGCATTCATTCACTCTGTTTGGACAGCGACAGTCTGTCGTCGTGGCCGCCAGTTCAGCGTCTGAGATGGAGAAGTGGGTGGAGGACATCAAGATGGCCATTGAACTAGCGGACAAATGCAACGGACCCTCGGCTGAGATCCTGTCCAGTAGTTTCACTGACAACAATGTTAATGAGTGTGGCTTCAGTGTTCAAACACAGTTTGTGGACACTCTTCACTGTTTTAACAGAGCATTTGAAGCAGTTCTCACTGTTTGCAGTGGATCATGTTTCACAGAATCCCCTGAGGAATCTAGCGCCGACCAGGAATCAGAAGATGACCTGAGCGCCTCGCGGACGTCTCTCGAGCGGCAGACGCCTCACCGTGGTAATACCACGGTTCATGTGTGCTGGCATCGCAGCACCAGCGTGTCCATGGTGGATTTTAGCGTAGCGTTAGAGGACCCTAGTCCAGTCAGTCTCTCAGAGGCTCCCATTGCGGCCCCGCTCAGGGCCCAGGGGCCGGTGTCTCTCTCTCTGGTGTGTTGGTATCGTGTCCAAAGCCTCTCCTTTAGTGAAACCTGCAGGAATAGAGAGAATCAGCTGTCTGGGAATCTGCTGAGAAAGTTCAAGAACAGCAACGGTTGGCAGAAGTTATGGGTGGTCTTCACCAACTTCAGCCTGTTCTTCTACAAAACACACCAGGATGAATATCCTCTGGCCAGCCTTCCTCTGCTGGGATACTCCATCACCATTCCCTCAGAGTCCGAGAACATCCATAAAGACTACGTCTTCAAACTCCATTTCAAATCACACGTCTACTATTTCAGATCTGAGAGCGAGTACGCGTTTGAGAGGTGGATGGAGGTGATCCGCAGTGCCACTTGCTCTTCCAGTCACATCCGCTCCTTGAGCCGCAAAGAGCCGCACGCCTACTGACCAAAGAGACCTTCGGACCGCCTGCCGAAACACCAACACACACACACACACACACACACACTGGCCGTTTACGTCAGGTTCTCAATCAGGTTCTCCTAACACACTTTAACATATTTCTTACGGCAGCGGGTTTGAGCAGGAATTGTTTCATGTGCTATATCGTCATTTTACTTTATAGAAAACAATCAGATTTTGAATGGGTTCACATGTGAAGTTTTTTGAGAATATCAAGGTCAGAGTCCAAAGAACTACTACAGTATCATCACAACATCGCACGATGGATAGATCAGCAGGTAACAGTCAAACACTTCCAGTTTTGCTGTTTGTTTTAAATGTGCAGTAAGACACGATATCATAGTAAGTAAACAACAGTCCATGTTCATGAAATGCAACTCATTTGTGTAAATTGTCCGTAAAATTGGCAAGAATGCTTTCAGGAATGGTTTTATTGAATGGTTATATGCGATGATTTATTCTTAAGAATGTTTTTGCGAATGTTTTATTGATTTGTACGTGACTGTTTATGTGCGAGAGCTTTTATAAATGGTTTATTGGGTGCTATTGTGTAAGTGAAACCGGTGTCATTGAGTTGAATGCAAACTATTTACGAACAGTTTACACATGAAATTGTTCTGCTTGTGTTTAATGAACTAAATGCCTGTAAAAGTAAGACGAGAAATTCAATCTCGGGACAGTTTTTAACTGTAGTAACACCACAGCTTTAATTACTGATGTTTATGAAGAATTGTCACCTTCTGTCTAAAAAAACTGGTGAAAGATGTTCAGGTCATATTTCACCCCAAAATCGAAAGGGAAAAAATTAAGTTTTTTGTTTGCATGAAGAAAATAAAGCCTATTTTAGGACCATTTTATTTTGTATTTTTTTTATTGCATTTTTCATGACAATTTGCCCTGAAATTTGCATTATTATTTATATATATATACACACACACACACACACATATAGTACAATAGTTAGATTACATAATGGTATTATTTGATGGATTTATACTGATTTTAATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463914 lncRNA upstream 256502 60419 ~ 162795 (+) True G403595
TU464350 lncRNA downstream 104613 550501 ~ 550742 (+) True G403952
TU464363 lncRNA downstream 136868 582756 ~ 583123 (+) True G403965
TU464369 lncRNA downstream 156944 602832 ~ 603583 (+) True G403971
TU464416 lncRNA downstream 203527 649415 ~ 649814 (+) True G404016
TU464546 lncRNA downstream 624720 1070608 ~ 1075893 (+) False G404137
CI01000299_00345042_00361660.mRNA mRNA upstream 57211 345042 ~ 362086 (+) True CI01000299_00345042_00361660
CI01000299_00315123_00328550.mRNA mRNA upstream 89134 315123 ~ 330163 (+) True CI01000299_00315123_00328550
CI01000299_00255175_00294177.mRNA mRNA upstream 125120 255175 ~ 294177 (+) True CI01000299_00255175_00294177
CI01000299_00151569_00153623.mRNA mRNA upstream 264825 151519 ~ 154472 (+) True CI01000299_00151569_00153623
CI01000299_00097393_00132755.mRNA mRNA upstream 286542 97393 ~ 132755 (+) True CI01000299_00097393_00132755
CI01000299_00689032_00727635.mRNA mRNA downstream 243018 688906 ~ 727836 (+) True CI01000299_00689032_00727635
CI01000299_00795673_00796901.mRNA mRNA downstream 349785 795673 ~ 797157 (+) True CI01000299_00795673_00796901
CI01000299_00826470_00828773.mRNA mRNA downstream 380545 826433 ~ 828960 (+) True CI01000299_00826470_00828773
CI01000299_00862803_00911972.mRNA mRNA downstream 416915 862803 ~ 911972 (+) True CI01000299_00862803_00911972
CI01000299_01036243_01046776.mRNA mRNA downstream 589149 1035037 ~ 1047603 (+) True CI01000299_01036243_01046776
TU463930 other upstream 8509 364139 ~ 410788 (+) True G403609
TU463894 other upstream 347026 35462 ~ 72271 (+) True G403578
TU464370 other downstream 158982 604870 ~ 606350 (+) True G403972
TU466101 other downstream 2708709 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 3685370 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 3849645 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 4043930 4505404 ~ 4505917 (+) True G405866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000106 False 3696 mRNA 0.52 27 NC_007112.7 2301974 ~ 2444210 (+)
bowfin (Amia calva) AMCG00014655 True 5089 mRNA 0.49 23 CM030128.1 25660345 ~ 25698928 (+)