RNA id: CI01000299_00315123_00328550.mRNA


Basic Information

Item Value
RNA id CI01000299_00315123_00328550.mRNA
length 2696
RNA type mRNA
GC content 0.44
exon number 6
gene id CI01000299_00315123_00328550
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 315123 ~ 330163 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCTGATGCAGGCGACGCGCTGTTGCCATAGGAACAGCATCCCAGCATCATTTATTGACACGCTCCCTGCACCGCCTCTTATTGGTCGCTCAACTGGGGCTGTAACCATTCGCGCCGAAGTTAAAAGCGGAAGTCCCACCCACCTCACTCACCATTGCCTTATTAAGAACAATGGTTACAGATGCCATGAAGTCCGCGCATTGGCTCTTTGTGCGCCTCTGTTATTTGTCTCTATGGCAAGTTTCCCGTCGCATCTGATCGGCTCGGACACTGTTAGCTGGTTCCATTACGCGCGTCACATCGGTTCGGCTCGGTGCGCAATGCGCGAGTATAAGGTGGTGGTGCTCGGCAGCGGAGGGGTCGGGAAATCCGCTCTTACGGTCCAGTTCGTGACCGGGACCTTCATCGAAAAGTACGACCCGACCATCGAAGACTTCTACCGCAAGGAGATCGAGGTGGATTCGTCGCCGTCGGTGCTGGAGATCCTGGACACGGCAGGTACGGAGCAGTTCGCGTCCATGCGGGATCTCTACATCAAGAACGGCCAGGGCTTCATCCTGGTCTACAGCCTGGTCAACCAGCAGAGCTTCCAAGACATAAAGCCCATGAGAGACCAGATCATCCGGGTGAAAAGGAGGAGGCAGATACATGCTGAGACGGCTGATGATAACTACAGTAACGCTGCTCATGGGTTCCCTTATAATCGCTGCATGACATTCGGTCAGTGCTTTAAGAGCAGACGCTCATGCTTCAATGATCCTCTAATAGATGTTGTGGGTCATGAAGGCTCGTGCTTCGTTAGACTCCAGGCTTCTGCTCATTATCGTGTCATGTGCATTCACAGGTATGAGCGTGTGCCCGTGATACTCGTGGGAAACAAGGTGGACCTGGACAACGAGCGTGAGGTTTCGTCGAGCGAGGGTCAAGCTCTAGCTGAAGAATGGGGCTGCCCGTTCATGGAGACATCAGCCAAGAGCAAAACCATGGTGGACGAACTGTTCTCAGAGATAGTCAGGCAGATGGACTATGCCTCTCAGCCAGATAAGGAAGACCCGTGCTGCTCCTCCTGCAATATACAATAACCCCTCGCAATCAGCATCGACATGGGCTTTTCACGGGGGTCTGAAGGGCGTCTACACACTAGAGAATGCTGCCAATCTATTGATTTCAATTGGAATGATGCAATGCAAAAACATACATAAAAAATGCAAAAGTGATGTTGCAGTCAAAAGTTACGAATATTGAACGTTTAGGCAACTCTAAAATCCATTGATTTCCATGGGAATGCTGCATTGCAAAGATGTAGATAAAATATGCAAGGGTTTGCAAAAGCTGTGCAAACAAATGTTTAGAATATGTAACTTTAAGCAATGTTGAAAATCCATTGATTTCAACAGGAATGGTGCATTGCAAGTAAGCAATAAGGTATGAGAGGCTGTGCTATATCGTGAATAAGTCATGGCTGAAGGGCGTTGCAACCCCTTCAGCTGTGACTTATTCACGATACAGCACTAGCCTCGAGTACCTTATTGCTTTTATAAAACGGTTACCACACAATACAAATATTAAAGCCAAAAATATGTATCAATGCAACTTTCATGAAGTAAATGTTCACTAAAAGCCTTCCTTCCACCAGAATAAGTAGTCCCTGACCGTGAACAGCGACAGAAGTTACATTATTACGCCATTAGATGGCGGCAAAGACTGTCTTTATGAGTGTGTCGGTCAGTAGCGAAGACTTTTATATTGAAAAGACTGAATTGTTGTGAACACAGAACAAGATGCAACTGACAAATGCTTTGACTAGCGCTGTCAGTCACGGGAAAACCCCTTAACTGTTAAAAGGACAAGATAATACATCAGACATTTAAACAGACTTTTATTATGAACATAGGACTGACCTGAAGGAAAATGCTAAATCTGAATGCAGGTAATAAACTCGCTCAATCGATCTCTTTCTCACAATACTCTTCTACATAATACAGTAAGCTTCAATGAACAATATTAATTGAGAACATACAGTTTACGTTGCTAAGAGTGGTTGCTAAGGGTGTTGTTTAGTGATACACAGAACCGCTGGGTCAAGAGGACATAGCTGTGTTTTATTGTGAATAAAACACAGCTATTGACCAATCAGAATCAAGGACAGAAACTAACCGCTTTATAAAAACAGATCAAATACGCAAGGGTTTGCGAAAGCTCTGCTAACAAAAGTTGAGAATTGTAACTTTTGGGCAATGTTGCAAATCCATTGATTTCAATGGGAATGATGCTTTTGCAAAGATATACATGAAAAATTCAAAAAAAAATAATGCAAACAAAAATTGAGAAAACATTTTCGCATCCGTTAAGCTCTTGGAATTTTAAGCGAGGCGGGTTCAGTTGTGCGTTTTGCAAATCCGGTTTGCTGCTTTCCCGCTTATGACCCCACATTTCCCTCACCTTCGAAACGGATCGCAAAACGCAGCTTTCTTTAGTGTGTAAACGCCTTAATTAAACACAATTATGATAAATGAATCAACAAGAAACTGTAAAAAAGGTCAAAGGGGTTATAAAAATGCACCATACTTGAGTCTTTCTTTTCTCCGCATGTTTTCAACACTTTCATTCTAAGTTTGACGCTGTTCGTAAGAGACTCGATCGACCATTTAGTTTGCACATATAGAACCTGATGTCTTAAACTGCCATTACTTAA

Function

GO:

id name namespace
GO:0045198 establishment of epithelial cell apical/basal polarity biological_process

KEGG:

id description
K07839 RAP2C; Ras-related protein Rap-2C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463914 lncRNA upstream 152328 60419 ~ 162795 (+) True G403595
TU464350 lncRNA downstream 220338 550501 ~ 550742 (+) True G403952
TU464363 lncRNA downstream 252593 582756 ~ 583123 (+) True G403965
TU464369 lncRNA downstream 272669 602832 ~ 603583 (+) True G403971
TU464416 lncRNA downstream 319252 649415 ~ 649814 (+) True G404016
TU464546 lncRNA downstream 740445 1070608 ~ 1075893 (+) False G404137
CI01000299_00255175_00294177.mRNA mRNA upstream 20946 255175 ~ 294177 (+) True CI01000299_00255175_00294177
CI01000299_00151569_00153623.mRNA mRNA upstream 160651 151519 ~ 154472 (+) True CI01000299_00151569_00153623
CI01000299_00097393_00132755.mRNA mRNA upstream 182368 97393 ~ 132755 (+) True CI01000299_00097393_00132755
CI01000299_00082987_00089134.mRNA mRNA upstream 225529 82723 ~ 89594 (+) True CI01000299_00082987_00089134
CI01000299_00069742_00072011.mRNA mRNA upstream 243039 69642 ~ 72084 (+) False CI01000299_00069742_00072011
CI01000299_00345042_00361660.mRNA mRNA downstream 14879 345042 ~ 362086 (+) True CI01000299_00345042_00361660
CI01000299_00419297_00444862.mRNA mRNA downstream 89134 419297 ~ 445888 (+) True CI01000299_00419297_00444862
CI01000299_00689032_00727635.mRNA mRNA downstream 358743 688906 ~ 727836 (+) True CI01000299_00689032_00727635
CI01000299_00795673_00796901.mRNA mRNA downstream 465510 795673 ~ 797157 (+) True CI01000299_00795673_00796901
CI01000299_00826470_00828773.mRNA mRNA downstream 496270 826433 ~ 828960 (+) True CI01000299_00826470_00828773
TU463894 other upstream 242852 35462 ~ 72271 (+) True G403578
TU463930 other downstream 33976 364139 ~ 410788 (+) True G403609
TU464370 other downstream 274707 604870 ~ 606350 (+) True G403972
TU466101 other downstream 2824434 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 3801095 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 3965370 4295533 ~ 4320141 (+) True G405842

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00014653 True 243 mRNA 0.58 2 CM030128.1 25522226 ~ 25530849 (+)