RNA id: XM_026929324.2


Basic Information

Item Value
RNA id XM_026929324.2
length 2483
RNA type mRNA
GC content 0.38
exon number 3
gene id LOC113535805
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2357669 ~ 2378000 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGTGTGAGTGCGGTTTTAGCAGCGCAGCtaacagaagaaaaacaaaaaaaaataacgcGGAGAGTTAGGACATGAGGACATGACGAAGAGAAATAAACTCATATTCACTCCCAGGACAGAGTTACACCGAGGATTCATTCTCAACATGTGAATTTATGGAGATAGGGACGGGGAAAGATGAAGGCGCTTCgtcatgttcagtgtttttggTGGTTCCTGGCGGTTGGCTGTCATCCAGACGATTCGCGCGCGCACGCAGAAATCCTCTACATCTAATCAAACTGGACACCTGGCTGTGAGGTTTCATTCATCAGCTCAAGAGCAGACAGCATATAAAGGCTTTGATAACAAGCTCAGCACCCTGTCAGATCTGGATCAGCACTACTACACCCTGTGCATGTTCTACGAGAACTGTGAGGTGTTGATGGGAAATTTGGAGATCACTAACACTGAGCACAACTGCAACCTTGACTTCCTCAAGATTAGTCACTTAAACCCTTAACTTACCCTCAGCCTCAAACTCAGCTTCAGCTTCCTTGAGCTGAGTCACACCAAAATTAACCTTTAACCTTAATTCTAAATCATAAACTTAAACTTAACCTACGTAACATCTTATGGCTAAGTAACACCAATGTTAATGCCAACATTAAGTCCCAACAACAAATATTCTTCAGGGTAAATCATATGAAACTTACCTTTGTACCCTAAACCTTAAACCCAATACCCTGCTTTATCTAAACTCAGAATCATTCCCAAATTCTTCCCTGGGCTCAATAaagtacatccatccatccatccactcgtCTAAATGACCACAACTTCCTAAAGACCATCACAACAAAATCTTTAGTCCTAAACCATAACCCTTAATAGCTACAAACTGATGGTAGGTGAATCATAAGTCTAAACTTCTCAACCTAGTCCTACACATTTAGTTAACTTAATGTTCAGTCACACTGTCACTACTTTTCCACCAGTTAAGGCTCAATTTATGCAGCTGTATTCTTTAGATGTGACAAAACCATCTGCATTCAGTATTTTACTAGCAAACTGACCTTGCCTTTATTAACTCATGGAGGAGACTTTACACTTAAACTTGTCAGGAGCTGGAATAACAGAAAATTGTGATCTGTCTGAGAGTTTCTGAGGCCTGGATTGAGAACCTCTGCTAtggtttatgtttatgtgaTGTTAGAGCTAGATAGTCATAAGGCACTGTTATCATCTTCATAATTTGTTGTATCATTGTCGTGTTAAGGCTGTCAGTAAGGATTCTCAACATTTGGGCATCTGGAGGCTTGATAAGGGCTATCAGTAGATATGAAaaggggaagaagaagaagaaactgtttttcttttttcatggtTAATCTCTTGGGCCTTTGCTGTTTCTATGATTCACTCTGTGATTATGTGGAACAGATGTTCACCTACATTTCAGATTCTCAAGATAAAAACACAATGGGaagtttgtgtatttgtaatGTAGCTTTATTCTCCAGGGACTTTccctaacacacctgattgaGCAAAGAACATCTGctatatcttttttttaccaGGTCATTTCAGCATGAACACTATCATCATTGCCATTAAATTACAGCTATTACAAGCTTTAATGGTGGTTTAATTCTTTCAGGGCTATTTCCATTTTCTATACTGAATGCAAGCTTGATTAAATCTACTCTGAGTGTATGAGAACAGAGACTGTGAGTTCTTTCAGATTGTCTTCACACTGTAAGTGCTCAGTAAACACCACCATAAAGTTAagcaaacttttaaaaaaaatgttagaatgCATACATGCCAACATACCTTCCTCTAGAATCTTTACAGGGTGTCACAAATGtttccatacacaggggaaattaatactttttagcaaaatgtcttccaaaaaagtttttcatacttagtttatattatgtttttttcagatagcctttaagaatgcctttgacaaaagaagaacgtttTGAAAtaattctcatggctggatcaggaagctgtcgcaaaattatgatggactttaacagaaAACATGACACGCACATCAAGCACAACACTTGCGAAACTTATTAATGAATTCGAAAAGACTGGACAATTTCcactgaaaggaaattgtaGGGAATTGCCACAACTTTGTGGCAGTAGTTTGTGAAATATGTGGTgtgttgtgatggtcaggtgtccacaaacttttggccatatagtatatatatttttctttcagagCATCCAGCATTTTTCCTTCTGAAAATTCCTGAAGGAATTGACATGTtgctctgttttcactttggttaacgaTTTCCTTACGTTGCCCATGATGCAACTTAGCACAGCTGTGTCATATAGCCGCAATTCATTCTGGAACTTTTTAAAgcatttgctgtctccactacttctgtGTTAGATTTATCATTAAAACATTGAATGCACTGGAAAAAGGTGAGTAACAAAATAAgcttttgctctttt

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437710 lncRNA upstream 451167 1901894 ~ 1906502 (+) True G369487
TU437694 lncRNA upstream 502694 1854746 ~ 1854975 (+) True G369471
XR_004577319.1 lncRNA upstream 719363 1525141 ~ 1638306 (+) True LOC117596156
TU438166 lncRNA downstream 134240 2512218 ~ 2512442 (+) True G369892
TU438267 lncRNA downstream 369384 2747362 ~ 2750073 (+) True G369969
XR_004577344.1 lncRNA downstream 374822 2752800 ~ 2757126 (+) False LOC113535706
XR_004577345.1 lncRNA downstream 374953 2752931 ~ 2757126 (+) True LOC113535706
TU438322 lncRNA downstream 425547 2803525 ~ 2827486 (+) True G370010
XM_034299891.1 mRNA upstream 18529 2332872 ~ 2339140 (+) True LOC113535762
XM_034299892.1 mRNA upstream 18529 2334720 ~ 2339140 (+) False LOC113535762
XM_034300422.1 mRNA upstream 227776 2036489 ~ 2129893 (+) True LOC113535765
XM_034300423.1 mRNA upstream 227776 2042820 ~ 2129893 (+) False LOC113535765
XM_026929347.2 mRNA upstream 328161 2018886 ~ 2029508 (+) True ube2f
XM_034299893.1 mRNA downstream 46986 2424964 ~ 2428461 (+) True LOC113535760
XM_034300418.1 mRNA downstream 53280 2431258 ~ 2435742 (+) True LOC117596191
XM_026928650.2 mRNA downstream 165853 2543831 ~ 2550565 (+) True lancl1
XM_026929303.2 mRNA downstream 176690 2554668 ~ 2558788 (+) True mylz3
XM_026929276.2 mRNA downstream 182829 2560807 ~ 2565250 (+) True pcnp
XR_004577325.1 other upstream 463840 1853186 ~ 1893829 (+) False hecw2b
XR_004577326.1 other upstream 463840 1853186 ~ 1893829 (+) False hecw2b
XR_004577327.1 other upstream 463840 1853186 ~ 1893829 (+) False hecw2b
XR_004577300.1 other upstream 549331 1797604 ~ 1808338 (+) True prkag3a
TU437668 other upstream 583017 1769193 ~ 1774652 (+) False abcb6a
trnay-gua_5 other downstream 1581755 3959733 ~ 3959819 (+) True trnay-gua_5
TU438816 other downstream 2031541 4409519 ~ 4413315 (+) False spry2
TU438880 other downstream 2158512 4536490 ~ 4549766 (+) True mpc2a
XR_004577314.1 other downstream 2275737 4653715 ~ 4913847 (+) False dmd
XR_003403602.2 other downstream 2275738 4653716 ~ 4913847 (+) False dmd

Expression Profile