RNA id: TU161370



Basic Information


Item Value
RNA id TU161370
length 1046
RNA type TUCP
GC content 0.47
exon number 9
gene id AMCG00001098
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15150275 ~ 15184392 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGTAACTGCAAACAAACGTTGCGCCTTAGTTGCGGACGGGACCACTGCAGGAAGACCTGTGTTGATCATGATCCGAAACAGCAGCAGAAAGTGCCTGAATGATCTGGTTAGCTGGCATCAAGACCAGGCTTTAAACACAACCATACTTATACTGCGAGAGTCTGGGCCAACTGGATTCCTTCTGAAGGAGGAGGGCGAGTCCAagagttttaaaGTATACTTAGGAGACCCTCACACTTGTACCTGCCCTGCatttctaaaagaaaaagacCTCTGCAGACATATATGTTGGGTTTTATTAAGGAAATTCAGACTGCCTCGAGATCATGAATACTGCTTTCAGCTAGGTTTGGTGGAAAGACAGATCACCTATATACTTCAGGGACAACACAGAGTACAGACTCCTCGACCAACTGACAGCTCTTCAGAGCTGAAGCAACACACAGGTGTGGAAGATGGATGTGTAAGGCAAAAGGAGATTGATGCTGAAGATGTGTGTCCCATTTGCCAGGAAGAGCTGTTGAAGAAAAGACTGCCTGTTTCATACTGCAGGTATGGGTGTGGCAATAGTGTTCACATCTCCTGCATGAAAATCTGGGCTGACCACCAGACCAGGTCTGAGACAGATACCATGGTAAAGTGCCCCCTCTGTAGGGAGGACTTTTCCTCCATGAAGTTTCTGCTGGAGCAAGTGAAGAATGCCGCCACTCTTGTAACAGCAGCAGAACGACAGCGGCTGGACAGACATCTGGGAATCGCTTGCAACGGCTGCATGGTCTGTCCCATCAGCGGCAAGTGTTTGAAATGTACAGTTTGTAGTGATTACCATCTGTGTGAGGAATGTTTCAGAAAGCAGGGCCACCCATCGCATGTTTTCGTTTTCCGTCTGAAGAGGACACTGCGGTGGCGATTGTTGGATCAGGCAGCAGTCTGTGGTCAGCCTCCAAGTGAAGCATTAGGGGATAAGTCAATGGTATCAGATTTTGAATCGATGAAGAAACAAGACAGTTTTACTATGAAGTCTGAAAAGGTCCCTGAACATATTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU161347 lncRNA upstream 96009 15071073 ~ 15073902 (+) True G128697
TU161300 lncRNA upstream 390470 14776859 ~ 14779441 (+) True G128663
TU161297 lncRNA upstream 393188 14773618 ~ 14776723 (+) True G128662
TU161007 lncRNA upstream 1084981 14084286 ~ 14084930 (+) True G128402
TU160870 lncRNA upstream 1706429 13461666 ~ 13463482 (+) True G128294
TU161406 lncRNA downstream 36206 15210353 ~ 15211325 (+) True G128747
TU161435 lncRNA downstream 151847 15325994 ~ 15326220 (+) True G128772
TU161494 lncRNA downstream 184496 15358643 ~ 15359014 (+) True G128815
TU161502 lncRNA downstream 234965 15409112 ~ 15412710 (+) True G128823
TU161512 lncRNA downstream 238633 15412780 ~ 15413107 (+) True G128827
AMCG00001094 mRNA upstream 98940 15061001 ~ 15070971 (+) True AMCG00001094
AMCG00001095 mRNA upstream 134330 14998017 ~ 15035581 (+) True AMCG00001095
AMCG00001087 mRNA upstream 441724 14696640 ~ 14728187 (+) True AMCG00001087
AMCG00001086 mRNA upstream 546060 14619523 ~ 14623851 (+) True AMCG00001086
AMCG00001088 mRNA upstream 567571 14522664 ~ 14602340 (+) True AMCG00001088
AMCG00001102 mRNA downstream 55724 15229871 ~ 15241090 (+) True AMCG00001102
AMCG00001101 mRNA downstream 87604 15261751 ~ 15264010 (+) True AMCG00001101
AMCG00001103 mRNA downstream 95105 15269252 ~ 15283103 (+) True AMCG00001103
AMCG00001108 mRNA downstream 120957 15295104 ~ 15318438 (+) True AMCG00001108
AMCG00001109 mRNA downstream 144803 15318950 ~ 15323639 (+) True AMCG00001109
TU160309 other upstream 3158486 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 5015724 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 6549716 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 13473664 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 13569272 1599696 ~ 1600639 (+) False AMCG00000723
TU161504 other downstream 234965 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 2848913 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 3371746 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 3381004 18555151 ~ 18558174 (+) False G129442
TU162456 other downstream 3714244 18888391 ~ 18889724 (+) False AMCG00001203

Expression Profile