RNA id: AMCG00001221


Basic Information

Item Value
RNA id AMCG00001221
length 3893
RNA type mRNA
GC content 0.54
exon number 32
gene id AMCG00001221
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 19161641 ~ 19186416 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCATCTCACTGGAACCAAGTACGGCTGTGGAGGGGGAGGATGCGGAGCCTGTACCGTGATGGTCTCCACTTACAACCCTTTCCAGGACAGAGTGCACCACTTCTCTGCGAATGCCTGCCTCTTCCCTATCTGTTCACTGTACGGGGCTGCGGTCACCACGGTGGAGGGGATTGGGAGCACCAAGACCAGACCGCATCCCGTGCAGGAGCGGATTGCCAAGGCTCATGGCTCCCAGTGTGGGTTCTGCACCCCAGGGATGGTGATGTCAATGTACACACTGCTGAGGAACAACCCTGAGCCCACCATGGAGGATATCCGAGAGGGCCTCACTGgtAACCTTTGTCGCTGTACTGGATACAGGCCTATCATTGATGGATTTAAGACCTTCTGTGGTATCTCCGGTGAGTTGTTCAAGATGGATGGAGTCTTACCCCTGGACCCCACTCAGGAACTCATATTCCCCCCAGAGCTGATGCTCCTGGCTCAGAAACAAGGTGCCCAGCAACTATGTTTCCAAAGTGACAGGATTCGGTGGATTTCCCCAGTGGATCTGTCTGACCTGCTAGAGCTCAGATCCACATATCCTGAAGCCCCCTTGCTGGTGGGAAACACAAATGTGGGGCCAAATATGAAGCTGAAAGGGGCCATCTACCCCATGATAATTGCCCCCGGCAGGATTGCGGAGCTGAGCAcagtgaaagagggagaggatgGAATCACATTTGGGGCAGCCTGCAGTCTGACTGCTGTGAAAGATGAGCTCAAGAGAGCAGTGTCTGAGCTGGCAGCAGAGAAGACAAAGATCTTCCAGGCTCTGCTACAGACGCTCAGCTGTCTGGCTGCGAAACAGATACGCAATGTGGCCACCCTAGGGGGAAACATTCTGAGCGCCAACCCAAAGTATGATCTGAACAGCATCATGGCTGCAGCAGGCTGCACCCTCACACTCGTGTCCAAAGGGGGGTCCCGAGAAATCCAGCTAAATGAGGAGTTTTTCACAGGATTTGGGAAAACTGTCCTCAGGCCAGATGAAATCCTACTTTCTGTCCACATTTTTTACTCCAGACAGtgGGAGTTTGTGTCAGCCTTCCGTCAGGCCCAGCGCCGGGAATTTGCCTTTTCCATCGTGAATGCGGGAATGAAGGTGGTTTTCAAAGAAGAGACGAACATTGTGGATTCTCTGAGCATCTTCTATGGGGGAGTGGGGCCCACTCTGGTCAGAGCCAGGCGCACGTGTCAGGAGCTCGTGGGAAGGCCCTGGGAAGAGGCGCTGCTGTGGGAGGCCTGTCGACTGGCTGGGGACGATGTCTGCCTCTCGCCCTCTGCCCCAGGGGGGAGGACAGAGTTCAAGAAGACGCTGACTCTCAGCTTCCTATTCAAGTTCTACATGCAGGTCCTGCTGAAGCTGAAGGAAATGGATGTGTGTGTCACCGACTTGCCTCCTGAATATCTCAGTGCTCTGAAGgcctttgaaaatgaaatgccacaAGGATATCACTCTTATCAGGCAGTCTCATCTGCCCAGTCTTTAGAGGATCCCATTGGACGGCCCACTGTGCACCAATCAGCTTTCAAGCAAGCAACAGGGGAGGCAGTGTATTACGATGACATCCCCAGCATCGACGGGGAGCTCTTCCTGTTCTTGGTGACGAGCACCCGTCCTCACGCAAAGATAATGTCCATTGACGCCTCAGAAGCAGTCTCCATGCCCGGAGTGGTCACCTTCCTGTCAACCAAGGATGTCCCAGGAAACAACAGGAGGCAGTGGTTAACTGAGGTGGAGGAACTCTTTGCTGAGGAGAAGGTGACTTGCGTTGGGCAGATCATTGGTGGCTTTGTGGCAAACACAAGGGAGGAGGCCAagagagcagcagagagagTGAAGATCAAGTATGAGGACCTGAGTCCAGTCTTCTTCACGATTGAGGAGGCGATCCAGCACCAGTCCTTCTTTAAGCCGGAGAGGAAACTGGAGAGAGGCAATGTGGAAGAAGCCTTTGAAAAAATTTACATGGGGGGCCAGGAGCATTTTTATATGGAGACACAGGGCGTTATTGCTGTTCCAAAAGGAGAAGATGGCgagatgcatttgtttgtggGAACCCAGCATGCTGCCTACACTCAAGAAGTGGTGGCCGCCACCTTGGGGGTTGATGCCAATAAGGTTACCTGCCATGTGAAACGTCTGGGCGGTGGCTTCGGTGGGAAAGTCATGAAGATTGCAGTGATCGCCTCGGCCGCAGCCACAGCGGCGCACAAGACGGGGCGCTCGGTGCGCTGTGTGCTAGACCGGGGGGACGACATGCTGATCACGGGCGGCCGACACCCCTTCCTGGGGAAATACAAGGTGGGCTTCTCGAAGGATGGCACTATACTTGCTGCAGACATTACCTACTACAGCAATGGAGGGAGTACTCTGGATGAGTCTTCCTTCATAATGGAGAAGGCTCTGCTACACATGGATAATTGTTACAAAATCCCCAATCTGAGAGGACGGGGCCTGGTCTGTAAAACCTACTTGCCATCCAACACTGCTTTCAGGGGCTTTGGCGGGCCCCAGGGCATGATGGTCATTGAGAGTGTATTGCATGAAGTTGCGGCTAAGTGCAGCCTGCCAGCTGAGAAGGTGAGGGACATTAACATGTACAAGGAGGAGGCTTACACCCACCACAGACAGCTGTTCGAGCCCCGCGACATGGTGCGTTGCTGGGAGGAGTGTCTTAAGAAGTCAGCTTACCACAATAGGAGGTTGGGCATTGAGGAGTTCAACGCCCACAACCGCTGGAAGAAGAGGGGCATCTCGGCTGTGCCACTGAAATTTGGCATCGGCTTTTCCAAAGGCTTCTTCAACCAGGGGGCAGCCCTTGTTCATATCTATAAGGACGGTTCTGTGTTGGTCATTCATGGTGGGACAGAGATGGGACAGGGCATCAACACCAAGATGATTCAGGTGGCCAGCCGTGTCCTGCAGATCCCCATGTCCTCAATCCACATCAGTGAGAGCTGCACGGGCAGTGTGCCCAATGCTGCCCCTTCGGCCGCCTCCTTCGGCACTGACGCAGTTGGCATGGCTGTGAAGGACGCCTGTGAGAAACTGATGAAGCGTCTTGAGCCAATCATGCGTGAGAACCCCAAATACTCCTGGGCCGAGTGGatAAAAAAGGCTTATTGTGAGAAAATTAGCTTATCAGCTACTGGTTTCTTCATGGGGCCCCACACAAGTGTAGACTGGGAAAAAGGCGAGGGCCAGGCCTATTTCTACTTCACCTGTGGAGCCTGCTGTTCAGAAGTAGAGATTGACTGCCTGACTGGAGATCATAAGAATATAAGAACAGACATTGTGATGGACGTTGGTCACAGCATCAACCCAGCTCTTGACGTGGGCCAGATTGAAGGAGGCTTTGTTCAGGGACTGGGACTCTTCACCCTTGAGGAGCTGAATACAAAATCCCGGCGCTCTGCGACATCCCGCCCCAGCTCAACACCCACCTGCTGGCAGACACAAGCAACCCGCACGCCATCTACTGCTCAAAGGCAAGGGCACTTTGCATTCTTCAATAGGAGTTTGTTTCCCCAACTTTCCCCAACTCCTGTTTCAGTTTTTCCCTGTCCAGCCATATGTCAGAGTTCCTTGGGAAAACACTTTTGCCTCGAAGATGGaatttctgctgctgttttgcaGGGAATCGGTGAGCCCACTGTTTTTTTCGGGTGCACCATCTTTTACGCCATCAAAGAGGCGATTGCCGCTGCCAGGAAGGACAGCGGACTGAGTGGCAACTTCCCCCTGAACTCCCCCGCCACCCCAGAGAAGATTCGTCTGGCCTGTGTCGATAGGTTCACGCAGATGGTACCTGCTGCTGAACCTGGTACCTTCACTCCATGGGCCGTG

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0016725 oxidoreductase activity, acting on CH or CH2 groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0050662 obsolete coenzyme binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors molecular_function

KEGG:

id description
K00157 AOX; aldehyde oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162505 lncRNA upstream 19496 19139859 ~ 19142145 (+) False G129594
TU162526 lncRNA upstream 52904 19105712 ~ 19108737 (+) True G129609
TU162512 lncRNA upstream 71403 19088148 ~ 19090238 (+) True G129597
TU162442 lncRNA upstream 359601 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA upstream 359601 18796850 ~ 18802040 (+) False G129552
TU162613 lncRNA downstream 186607 19373023 ~ 19377913 (+) True G129674
TU162629 lncRNA downstream 451186 19637602 ~ 19653509 (+) True G129689
TU162635 lncRNA downstream 594834 19781250 ~ 19781607 (+) True G129695
TU162636 lncRNA downstream 595231 19781647 ~ 19781862 (+) True G129696
TU162651 lncRNA downstream 808611 19995027 ~ 20095067 (+) True G129708
AMCG00001209 mRNA upstream 23024 19133035 ~ 19138617 (+) True AMCG00001209
AMCG00001210 mRNA upstream 31364 19124062 ~ 19130277 (+) True AMCG00001210
AMCG00001212 mRNA upstream 67107 19094157 ~ 19094534 (+) True AMCG00001212
AMCG00001207 mRNA upstream 122223 18982280 ~ 19039418 (+) True AMCG00001207
AMCG00001202 mRNA upstream 254024 18891932 ~ 18907617 (+) True AMCG00001202
AMCG00001220 mRNA downstream 3635 19190051 ~ 19192097 (+) True AMCG00001220
AMCG00001219 mRNA downstream 44647 19231063 ~ 19243511 (+) True AMCG00001219
AMCG00001223 mRNA downstream 291844 19478260 ~ 19492344 (+) False AMCG00001223
AMCG00001228 mRNA downstream 919639 20106055 ~ 20111585 (+) True AMCG00001228
AMCG00001226 mRNA downstream 945071 20131487 ~ 20151385 (+) True AMCG00001226
TU162506 other upstream 19496 19043304 ~ 19142145 (+) True G129594
TU162456 other upstream 271917 18888391 ~ 18889724 (+) False AMCG00001203
TU162312 other upstream 603467 18555151 ~ 18558174 (+) False G129442
TU162326 other upstream 613726 18545893 ~ 18547915 (+) True G129453
TU162207 other upstream 1117390 18023060 ~ 18044251 (+) True G129365
TU162623 other downstream 299722 19486138 ~ 19489600 (+) True AMCG00001223
TU162705 other downstream 1424856 20611272 ~ 20676857 (+) True AMCG00001236
TU162792 other downstream 1732142 20918558 ~ 20925240 (+) True AMCG00001241
TU162800 other downstream 1755656 20942072 ~ 20942397 (+) True G129843
TU162840 other downstream 1890719 21077135 ~ 21078870 (+) True G129877

Expression Profile