RNA id: TU162505


Basic Information

Item Value
RNA id TU162505
length 1424
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id G129594
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 19043304 ~ 19142145 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttaatttctctttattttttttaaaaagtcaatttatatcagggtaaagaaaaaaaaaaaaatgtaaccgaTATTAATTCATAAAGCTGGCACTGTAATTTCCAGGATATACTTCAGGTACAGTTCTACACCTGTGGTACTCACCCAGTACCAGTctgtaaatcattatttttgtggGTCTTTTTTTGAAAGGGAAGATAACTAAAACTggttataacaaaacaaaacaaaaaaaaaaaacagggcttCTTCCTTTGGCAAAATGAAAGACACCAAAAAGGgccaaaacttaaaataaatattgaagcAACTCTACAACTGGGGAAGGATTAAGTTGGATGCATTTCTCCTCAGTTTACACAAGAACATGCCGTTTGAGGTCCAAATTAGTTCCGTCTTGTTTGGAAGCAGCACATTCTTAAAGGTTTAGATCGGATTCTGAATGCCGTGGGGACGTAACAAAATGAACCATGTCCGTCTAGGGAAACCTTACAAAAGTGGGCGAGGTCAATTTCTCATGCTCTGTCCAAATTGAAACACTTGTAGCGTCAGTGAATTTACAGCAATTAGGGAGACTGATTCACAAGATGCTATATGAAGTGTCAACTATTTTTACATAGAAAAAGGAGGAGTTAAAATTGACTGGTTGTTAAAGCCCTTAAATTACATCTAAACATTACAGCTGAAAATACAGGAGgtagaatagaaaaaaaaaaaaaaaaaaaattgaaagacgAGCACTTCTGTAACAAAACATTCTACAGCTCCTGTTgctactttatttaaaacacgAGTCTTGGCTTGAGGTTTTAGTCACcttcttcagtttcagactccGATTCTCTTCTGCATTCTTGAGCCATTCAACAAATTTCTTCATCTGCTCAAGGAACACACTTTTTCCTTTAGAGACGTGGGAATCGGTGTACCATTTCAGAATAGCTTCTTCGCTCAATACATCCGCTTTGTAGAGAAGCACCACAATTTTCTGAAAGGCCTTCATGAAGTGAATGTTGTCATAGCAGTACTCCTGGATCTTCAGCAGGAGAGTGAGCTCGGAGAGGCCTTGAGAGCTGAAGGCTTTGAGTAGAGGGCTGTATTGCTTCAAGTGTTTGATGGCTTGTTCAGTTACCAGCTCCTCCTTCTTGTTCCACTCCACTGAGCTCATCACACTTGTCCACACAATGCCGATCATGGTCTGCTCAGAGATGTTGGTCTTCTTCATCTCCTCTTTGACATAAGTGATAATATCTTTAAACGGATCACCACGTGACATCTGCTCCTGGAGCTCCTTCTGCAGCTCCTTTCTTGCCCCGATGGATTGCTGATTCCGGGCGAAGTCCGACAGCTCCTTTAAACCCGCGTCGGTGAAGTACTTTGAGAAGTGTTCACAGCTCCGCTTGTTGGCGGGGAACAGTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162526 lncRNA upstream 31122 19105712 ~ 19108737 (+) True G129609
TU162512 lncRNA upstream 49621 19088148 ~ 19090238 (+) True G129597
TU162442 lncRNA upstream 337819 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA upstream 337819 18796850 ~ 18802040 (+) False G129552
TU162309 lncRNA upstream 582755 18555151 ~ 18557104 (+) True G129442
TU162613 lncRNA downstream 230878 19373023 ~ 19377913 (+) True G129674
TU162629 lncRNA downstream 495457 19637602 ~ 19653509 (+) True G129689
TU162635 lncRNA downstream 639105 19781250 ~ 19781607 (+) True G129695
TU162636 lncRNA downstream 639502 19781647 ~ 19781862 (+) True G129696
TU162651 lncRNA downstream 852882 19995027 ~ 20095067 (+) True G129708
AMCG00001209 mRNA upstream 1242 19133035 ~ 19138617 (+) True AMCG00001209
AMCG00001210 mRNA upstream 9582 19124062 ~ 19130277 (+) True AMCG00001210
AMCG00001212 mRNA upstream 45325 19094157 ~ 19094534 (+) True AMCG00001212
AMCG00001207 mRNA upstream 100441 18982280 ~ 19039418 (+) True AMCG00001207
AMCG00001202 mRNA upstream 232242 18891932 ~ 18907617 (+) True AMCG00001202
AMCG00001221 mRNA downstream 19496 19161641 ~ 19186416 (+) True AMCG00001221
AMCG00001220 mRNA downstream 47906 19190051 ~ 19192097 (+) True AMCG00001220
AMCG00001219 mRNA downstream 88918 19231063 ~ 19243511 (+) True AMCG00001219
AMCG00001223 mRNA downstream 336115 19478260 ~ 19492344 (+) False AMCG00001223
AMCG00001228 mRNA downstream 963910 20106055 ~ 20111585 (+) True AMCG00001228
TU162456 other upstream 250135 18888391 ~ 18889724 (+) False AMCG00001203
TU162312 other upstream 581685 18555151 ~ 18558174 (+) False G129442
TU162326 other upstream 591944 18545893 ~ 18547915 (+) True G129453
TU162207 other upstream 1095608 18023060 ~ 18044251 (+) True G129365
TU161504 other upstream 3718979 15409112 ~ 15420880 (+) False G128823
TU162623 other downstream 343993 19486138 ~ 19489600 (+) True AMCG00001223
TU162705 other downstream 1469127 20611272 ~ 20676857 (+) True AMCG00001236
TU162792 other downstream 1776413 20918558 ~ 20925240 (+) True AMCG00001241
TU162800 other downstream 1799927 20942072 ~ 20942397 (+) True G129843
TU162840 other downstream 1934990 21077135 ~ 21078870 (+) True G129877

Expression Profile