RNA id: TU162309


Basic Information

Item Value
RNA id TU162309
length 1573
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G129442
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18555151 ~ 18558174 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACttctggaaattggccctccaccaccagacattgggaacccctgttctAGAACAAACTTGCCATTACAAACCAAAATAGTTAAGATGGCCACTGAAGTCCTCTTGCTTTTAGAGTCTTATTTCCATAGGCTAcacttgcaaaacaaatatttaattctaattttTCCAACAAAACTTGGAGAAACTATTGGTATGAACATACTTTACCCACCAAGTCCACTTGTTTTCAGATGGAGAACCAATTAAAAGAATAGAAGCCTACTCCCATTTTTAGGTAAATATCCCAGGAGGTTAACTAAGCATATACACCTGTATTACTAATGTTAAATTTAGGGCACCCGTTTTCAAAAGTTAAACCAGTAACTTGCACATATTGCATCAATGCACTAGTTTTTCAACAGATAAATCACACCCACACATCTTTATAAGAACCCAGTAATTGACAATATTTACATAAgcatacatttgcatttcagaattaaaTTCTGAAAATATTGCCTTTGATATACTGCATCTCCATCAGTTGCCGTTTGATCTGCTGCTTCCCATGAGTATGTGCTGACCTAAAACCATTACTTTGCATTAATGATATATTCAGACATTGCCAGTTCTTCTGGCCATAACCAATTAGGGGCcctcaagaaagaaaaaaactccaCGAGCAGATAACACTTCATGAGtttaagacaaaaaacaaaaatcacagaaaaGTGACACTTTACAACTCCTTTTATTGGATGGTGTTTTAGCCAAGATACACGGCTTAGAGTCCATGTCAGTGAAATCCCAAGGAAACTGTACAGAACAAGTTGCTTTTTGAAGAGAGGATCACAGAAGTTTACTGGTCCTTCAGCTCCTTCAGTCTTCTGATGGCAGACTTGACTGTAACTGCAGACGTTGTGCTaaggaacagaaaacaaatccactTACAACTGTAGCATTCCTCAAATATAAACTCTTTTACACTTTCAGACCATTTATTAATCTGCCCCTACATCCAAATTCACTGGCATGTTAGATGTGCAAGGGTTCATAATAAGTCTACTTTCTGGCGgtgatatttttaataaaacctttagAATTGCTgctaattttatacaaatgtaacCTTTGTGAAAAACACTGACAGATTATGCAGTCTGCCTTTCACGTAAGCTATCAAATACCTGatgcttttttcccttccttCTAGGATTTGCAGTTTCAGTACACAAAGCAACAAGAAAAGCACAGAACACATTTGTATCAATTATTCCACATACTTGTATGTCCAAGCGCCTCCAGCAACAGTCTTCATGCAGGACCCACAGTTCCAGATGCCAACAGCCTTTCTCTTCATCTTGGTCTGGAACAGAAGGAGCAGGTGTACTTGGCGTGCTGGGTGATTTCAATCTTCTTCACCATCTTCCTGAGCGAGGCACCATAACGGGTACCGTACTTCCCGACAATCCCAACCTTCTTGGTGCGCTTGGCCTGGGCAAAAATAATACGAAGAGTCAATTCAACTAATATTGTCCCGGTTTTCACACCACCAACCTCATAAAGGCCACAAACATAACTTGAGAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162181 lncRNA upstream 578215 17972009 ~ 17976936 (+) True G129343
TU162082 lncRNA upstream 862625 17691507 ~ 17692526 (+) True G129255
TU162040 lncRNA upstream 1004360 17487392 ~ 17550791 (+) True G129221
TU161853 lncRNA upstream 1408082 17144190 ~ 17147069 (+) True G129080
TU161844 lncRNA upstream 1662790 16889638 ~ 16892361 (+) True G129071
TU162442 lncRNA downstream 239746 18796850 ~ 18802040 (+) True G129552
TU162443 lncRNA downstream 239746 18796850 ~ 18802040 (+) False G129552
TU162512 lncRNA downstream 531044 19088148 ~ 19090238 (+) True G129597
TU162526 lncRNA downstream 548608 19105712 ~ 19108737 (+) True G129609
TU162505 lncRNA downstream 582755 19139859 ~ 19142145 (+) False G129594
AMCG00001189 mRNA upstream 50021 18499105 ~ 18505130 (+) True AMCG00001189
AMCG00001188 mRNA upstream 60550 18462098 ~ 18494601 (+) True AMCG00001188
AMCG00001190 mRNA upstream 144097 18374499 ~ 18411054 (+) True AMCG00001190
AMCG00001191 mRNA upstream 208093 18324606 ~ 18347058 (+) True AMCG00001191
AMCG00001186 mRNA upstream 254945 18267076 ~ 18300206 (+) True AMCG00001186
AMCG00001195 mRNA downstream 222830 18779934 ~ 18784243 (+) True AMCG00001195
AMCG00001203 mRNA downstream 331180 18888284 ~ 18889722 (+) True AMCG00001203
AMCG00001202 mRNA downstream 334828 18891932 ~ 18907617 (+) True AMCG00001202
AMCG00001207 mRNA downstream 425176 18982280 ~ 19039418 (+) True AMCG00001207
AMCG00001212 mRNA downstream 537053 19094157 ~ 19094534 (+) True AMCG00001212
TU162326 other upstream 7236 18545893 ~ 18547915 (+) True G129453
TU162207 other upstream 510900 18023060 ~ 18044251 (+) True G129365
TU161504 other upstream 3134271 15409112 ~ 15420880 (+) False G128823
TU161370 other upstream 3381004 15169911 ~ 15174147 (+) True AMCG00001098
TU160309 other upstream 6543726 11999664 ~ 12011425 (+) True AMCG00001002
TU162456 other downstream 331287 18888391 ~ 18889724 (+) False AMCG00001203
TU162506 other downstream 486200 19043304 ~ 19142145 (+) True G129594
TU162623 other downstream 929034 19486138 ~ 19489600 (+) True AMCG00001223
TU162705 other downstream 2054168 20611272 ~ 20676857 (+) True AMCG00001236
TU162792 other downstream 2361454 20918558 ~ 20925240 (+) True AMCG00001241

Expression Profile