RNA id: AMCG00021439


Basic Information

Item Value
RNA id AMCG00021439
length 1913
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00021439
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17483091 ~ 17492659 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGGACTTGGTGAGACAGGGCTGTGCAGAGATGGCAGTCTGGATTGCTCTGGGACTGGTGATGCTGCTGAGCTCTGCCTGCTCTGGACAGAATGGGAGCACCACCCAGGTTCCTACCAGCCCCACCACAGTACCAGCGGCTTCAGACATATTCTGCAAGGACAAGCAAGATTTTGAGCCATGTGCCAGAAGCTCCCAATTCAAGCAGTGCAGCAGCGCCGGATCCTGTTACTGCAGGCAAAATCAGCCCTACTGCAGTACCACCACTCTGATCTTGGTGACCACCCTGCCTGCGCTGGCCCTGGCCCTGCTGGTAGGGGTGCTGGTGCAGTGCGTGCACTACTGGAGGACACCAGAGGACCGGCAACATAGGAAAGAAATAAGACATACACAAAAAGGCATCCCCCCTCAACTACTCACCCCAGACAACGTGTACAGTAACCCGATATTCACCCATGAACCGGAAGTGTTTGACAGGCACATCGAGAATCCCTTCAGGATGAGCCTCCAGAGACCCCAGGCTGTGAATTTGTACCCCGCAACACAGGAGGCCGCACCCCCAGGCATGTCCTACAGTTATCAGACGCACCAGCTCAAAGCTCAGCCCTTCTATCCTCAGTACTCTGGCCACCCACCCAGCCAAACACCCAGTCAAACACCTAGCCACCCACCCAGCCACCAGCCCAGGAACCCATACACGGGGGAATCAGATGACAGTGAGGAGGATTACAGAATACGCAGGCCCACACTGCACCCAGCTGGAGCCTACGTGACCAGATCCATGCTGCCCCCTCCTGGCCACAACAAGTCAGCTCCAGATCCTGGCCCTCGGGCTATGCCGAAAGGTGCTGTGCCCATATTTCCCCCCAGAAGTCCCCCTTCACCCACCTACCCCACATCAGAAAATAAAGCCCAGATGCAGTTTCCCCGACCGCAGATCATATTGCAACACTGAGAGTGGCTCCATCCTCTCCTGTATGCCTGCTAGACCATGCATGCCCTCACCAATACTACTCATagctgtgattattattattattattttttattagcagatgcccatgtccagggtgacttacaagatataagagcaatacaatgtgcaataatacagtgcagtgataCAGGATTAAGctacatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagattGTGGTGTGAATTGATTTTTTAGGTAGGGGCAAGGGGCAGGCCAGTGCTGGTGGGACTGGTCCTGACAAGGATTTCTGGGTCTCTTTAACCCTATCCCTCCACCTACTAAAGATATGCGACTGGACTGTGAGAAATTCAGGAAGTAATAGTCAAGTAGTAGATGAAACAGTATGGATCACAGAGTGGGAAATAAAACCAGAAGCAGCATCTCTAAtgtgacaaaacaaagacagttacaaaataatgtacacacacacacagtctagTTCAGCTGTACTCCTTAGTGAATTACTAAACagtgtaatattttttaaattaaattgagtgCAATAAATTGTCAGTATTACCTAGagcactgtacagcactgtacaTAAGGCAGGAGTCCACAGTACAACTCCCTCAGCTTGCAAATCATGtggttaaatataattttgatcCATGGTGCAGTTTGCATCATGAAAGGCTTAATTTACATTCTTAGAGTTCCTCTAGCCCCTGCAGCTTTCCTCTCGTATTCTCACGTTGTGTtccattgcaaaacaaataattagcattgtacagtacacacatatgattgtgtatatacacattattaaaCTATAGTCAAtgattgtctttttaattgcatttcatgtCTCAAAACTGTTTACAATGActcaattgtttgtttgtttctttgcaagCAGATCTGTCTCTCTCATGGTTAAACTGTGATAAACTCAATTTCTGGGA

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107316 lncRNA upstream 9695 17470325 ~ 17473396 (+) True AMCG00021441
TU107314 lncRNA upstream 23150 17459493 ~ 17459941 (+) True G85976
TU107274 lncRNA upstream 184278 17298159 ~ 17298813 (+) True G85941
TU107214 lncRNA upstream 395297 17086752 ~ 17087794 (+) True G85903
TU107184 lncRNA upstream 440516 17036572 ~ 17042575 (+) True G85876
TU107331 lncRNA downstream 14867 17507526 ~ 17509083 (+) True G85992
TU107332 lncRNA downstream 16426 17509085 ~ 17509295 (+) True G85993
TU107338 lncRNA downstream 20469 17513128 ~ 17513621 (+) True G85999
TU107346 lncRNA downstream 34067 17526726 ~ 17527126 (+) True G86006
TU107347 lncRNA downstream 39960 17532619 ~ 17532820 (+) True G86007
AMCG00021441 mRNA upstream 11357 17470366 ~ 17471734 (+) False AMCG00021441
AMCG00021442 mRNA upstream 46493 17430466 ~ 17436598 (+) True AMCG00021442
AMCG00021443 mRNA upstream 54888 17427517 ~ 17428203 (+) True AMCG00021443
AMCG00021436 mRNA upstream 63269 17404018 ~ 17419822 (+) True AMCG00021436
AMCG00021438 mRNA upstream 83455 17371482 ~ 17399636 (+) True AMCG00021438
AMCG00021440 mRNA downstream 2134 17494793 ~ 17507130 (+) True AMCG00021440
AMCG00021451 mRNA downstream 540532 18033191 ~ 18050404 (+) True AMCG00021451
AMCG00021450 mRNA downstream 568962 18061621 ~ 18067774 (+) True AMCG00021450
AMCG00021453 mRNA downstream 616419 18109078 ~ 18112221 (+) True AMCG00021453
AMCG00021454 mRNA downstream 675188 18167847 ~ 18170544 (+) True AMCG00021454
TU107177 other upstream 478960 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 769053 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 821209 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 890118 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 1409473 16063600 ~ 16073618 (+) False AMCG00021373
TU107506 other downstream 755831 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 1787106 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 2007141 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 2849951 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 2885764 20378423 ~ 20380424 (+) True G86616

Expression Profile