RNA id: TU709


Basic Information

Item Value
RNA id TU709
length 4809
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id setdb2
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2493572 ~ 2558527 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGTTCAGGGCTCTGGAGCGGTGTGTGATGTTGAGCTGCAGGCCCATGAGCGCCAGCAGGCAGGCGGTGCCGTTACGGTCAGTGAGGGTGTAGTTCCCTCGCTCCGGAGCCGGCGGCGGGACAGGAGACGGGGCGGCCGTGGTTCTGGGCGACTGAGTCGGGGCGGAGGTCGTAACAGTCTGATCAGCACTGCAAacactctctacacacacacacacacacacacacacacacacacacatttacaacttgtccttttaatatttttttacaaaatgacatTGAAAACAATTATACTTGTTATTATAgacatttcagttttcattttaatgttagtttttttttcactgtgtgcttttgtcatttttttaagttccatttagtacattttatgtCAGCTAACATTTAATgcatataggttttttttttatcacttttatttactgttatttcactagtttgggtttattttgaatgattttatttcagttacctGACCAGAGAACAACCTTATCtccatgttttatttgtattgttgtGTTAGCCGTATAtgtgaataaaaagaaagttttgTAGTAGCTTTCGTAAAACAGCGCAGTTTTTGTGATGAAGAGCACTCTGGAGACGCACACACTCTGAGCATCAGATTACCCAGCAGCCCACGGGAGACCAGTTCTGATTCAAGAACGAACGATTCGGTGCAATTCAGTAACTTGTTCAGCCGGTCGGCCGAAAAGAACCCAAAGGAGGATTCATTCACACGAGTGCGGCCACAGACACGTGATTACCGTCGCTGCTGAAGTCCGCTCCTCTCATGTAAGCCTCCAGGTGAACGTCAGAGAAGGTGAGGTTGGCCTCGGAGCTCAGCCTGATGGAGCTGGAGCTCACGCACCTGTAGGTGCTGTTCAGCCTCGCCCAGATCTCCGTCACGTTCGTCATCACCGTCACGAGTCCTGAAGAGAAGAGCATGTGAGCGGGCgctggtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgaatgtgagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcacctgtgCTGGAGGACTGCGGGAAGGTGCTGGAGTCGCTCAGGTTGTACTGCAGGCTGATGTTGGACACGCGGTAGAGCCCCTCGTCTTTGGAGaacaggagcgtgagagagtgACCGGCTCCGAAGGACACCTGCAGCTCCTCTTCACCGCAGGAGCTGCTCTCACCCACCACCGCCGAGGACGGAAGAGCAAACCTCACCGcgctctgacacacacacacacacacacacacacacacacaccagacaccacagaaacacacacacacacacacacacacacacacacacacacacagacacacacacacccacagacacacacacacccacagacacacacacagacaccaaaATACcttaacattttctaaaacaaaaacggAAAATGTCTTATAGGTTGTTTTCAAGCTTGAGGTTGCCAGATGTCAAAAGTTCCAAATCCCCCCAAATAAGAGCTTTTCTCTGAGAAGGATACAGCGCTTTACTTAATCTTTCCTACTTGGCAACCATGGAGCTGCTGGAATTTCACTGTTTTAGCTTTTGATGTTTACCATTTTGGAATAAACAGAGTCTGTTAATGTACTAAACCAGAGCAGACCACTAAACCAGTCACACGggacacttttcttttttaaactgagATTAATGCTTTATCTGAATGAGATTCCCACTGATTTATGTTTCTTAGGATAGGACAGTATTAGGGTgcaaaaatactgagaaaatcacctttaaagttgtccaaataaagttcttagcaatgcatattactaaccagaaataaagttttgatatatttaaagcaggacatttacaaaataatctttacttaatatcctaacaATTTTTGGataattttgactcatacagtagattttgtttttataaatatatctgtgctgctgatgactgcttctgtgctccagagacactgaatataatattaaatgacaACAATCATAATCAGTAATCacaattttgtgaaaaataaaacttgattATCAGTCAAACCATTTTAAAGCATGAATAAATTCTCAAGATTTTAGttaattgtgtgtgtggttttacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgtgtgagtatgagtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgagtgtgagtgtgtgtgtgtgtgtgtgtgtgagagtgtgtgagcgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgttgtaccgTTCCGTTGGTTGTGGTGTAGGTGATGCTGAAGCTGGCGTTGAGATCTGCTTTAATGCAGGTGGAGTTTCCATCCTTCACCTCAAATGTCACAGAGTGAGCCGCAAACACACACCCTGAAACaccagcatcatcatcatcatcatcatcatcatcatcgtcgtcatcTTCGTCAGTGGGTGTGTTGTGAGTCAGCGTCCAGCAGAGAGCGCCGACACACTGATGCCGCAGCATAAGTTAAGATGAAGGTGCTTATATTAAAACTTCTTTTATGtgcaaacaaagctttttctgATTCCTCTGTTGTAAagtacaataaatgaaaatgaatattccatatgtataatatttttgctttatacaGTAAGGAAACCAGAGAGATGTTTTGAATGTAGACCACATTGAGCTGTCAGCAATCACACGGAAACTAAAGACAGCAGCTTCGAAGAAAACACGCTGAAAAACATCTAAATTCACATTAGATGCAATAAACGGGTTGAACGGCGCAAGATTAAAGTATATAgtgcttttagttttagttagttTGACAGATACTGCACCAAAGCCACAACGTTATGGTTCTTTAAATATGGTGTAATAATCATCTTGTGACAGTTTTTCCACCGAGATGCTGATAATCTCTGTTCACCTGAAGACATCTCTCACAGATCAAGATCTGGAGCGGGAGGTCAAGGCGCGGCTGGTGAGCCTGGTTTAGGTGCCGTCACGACAGCATTCAGAAAGAGCACGTTTAATCTTACGGAGAGTAAAGATTAGACCCAAACACAGCATTACCAACTGACTGAAAGAAACCGGCTTCAACTACAAGCCCATGAAGAACGACCAATTACCAAAAACATCTGAAGATgttgattattaataaacagtacGGCTGTCAAAAAGGAATTTGAATGTTTGCCAGATTTAGGTTGAATCCGCTGGACGAGGCGCTGCTGAGCTGTTCGTTTAGaagatcacaaaaaaaaacagagatttAATCTAAACTGAAACGAAACTATTCACAGCAGATGCAGACGTGTCATATTTTCTCGTCGCTCGCGTTTAGaaagacatgcaaaatgataaaaaaacatctaacGTGTGATTGGCTTTCATGAAGCTAtgcataaattatgttttttattataattattatattacatttggcTATCggtttataaatgtgttattaaatatcaattatCCAGTAATTAGAGAAAATGattgctgttttatttctgGACCGACTTCTGGTCACATGACTTCTACAGATGAGCTGATTGGTCAGATGCAGCCAGAGGACCTGCTCCAGCCGAGTAACATGCATTGAAACGATCAGAACAACGCTTCTCTTCAGGAAGGGAGACAAAGCTAGCCAATCAGCGTGCAGGATGACCGGAACAACGACGGGGTGCGACCTGGACCGAGGTGCTGCTGTTCTGATCACGTGACGCCGAACTGCCGGTCACGTGACGTCACGCAGCGCGTCCGAGCgaaagtaaaaacacacacacacgggactGAAAGGACACACTTGACCGCGTCGTTTAACTTCAAAAACACACCGAACCGAACCGAACCGAACGGAACCGACCGGCGCCGGTCAGACGCGCGTGTGACGTCAGCGAGAGTCGCGCGCGACAGCGTCGTGACTTCACGTTCAGACCGGTTTACGATGTTTAACGACAACTTCGGCGGAGTTCCGATGATTTACCCGTCAGGAGGATCCAGCAGACACCTGCGGCGGAGCTCCGTGTGACCGGCATGCCTCGGTCCGTCAGGAAAAGCGTCAGAACCCCGAACACTGAGTGAGAAAGCCCGCGGGCCGAAGACGAAAGATCCGAGATGTTTAAGCGCGCGTCTGTCGGCGATAAACCGAGTTCGTTCGGTGTCTGGCCGCAGAGTCACTGTGTCATGAGGCGGAATATTCCAGTCATGTGATGAGAGCgctttagccccgcccactccggTCACGTGAACGTGACTCACTCTACGTTACTTTAATATAAGTGTTAGATACGTGTTAAtatcagttaattaaaaaaaatggcagtttaagtgttattttaatgttgttgaaGCTGCATAGCACAAATATAGAGGTGTGACTTATTAGagtttaaaatcataaatacatcTCACGATTCCCCGTCTGATATTAATCAGGTTTACTGTCAAGGAACATGTTTTAACACTGAGATTTCTAAACAATCTTTCCATTGATTTTCTGGTTTGTTCTGATCGGACAGTATCTGAGGGAGAAAAACACGAGGAAATCACTTTAAAGTCgcccaaatgaagttcttagcaatgaatattactaatcagaaatgaagttttgatatatttacgataggaaatgtactaaatatctttAAACGTGATCTCtacttaatataatgttttttgacataaaagaaaaatgaataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU721 lncRNA upstream 1695 2489483 ~ 2491877 (+) True G485
TU681 lncRNA upstream 71925 2420476 ~ 2421647 (+) True G463
TU641 lncRNA upstream 120416 2372715 ~ 2373156 (+) True G440
TU668 lncRNA upstream 166242 2323285 ~ 2327330 (+) True G457
TU640 lncRNA upstream 217301 2275992 ~ 2276271 (+) True G439
TU706 lncRNA downstream 15968 2514988 ~ 2515506 (+) False pcid2
TU741 lncRNA downstream 40213 2539233 ~ 2540401 (+) False G504
TU742 lncRNA downstream 40213 2539233 ~ 2540401 (+) True G504
TU743 lncRNA downstream 41467 2540487 ~ 2542309 (+) True G505
TU754 lncRNA downstream 80296 2579316 ~ 2583647 (+) True G512
XM_043246029.1 mRNA upstream 4469 2483640 ~ 2489103 (+) True grtp1a
XM_043238321.1 mRNA upstream 12013 2469473 ~ 2481559 (+) True adprhl1
XM_043238312.1 mRNA upstream 12013 2470319 ~ 2481559 (+) False adprhl1
XM_043238329.1 mRNA upstream 16072 2470483 ~ 2477500 (+) False adprhl1
XM_043246780.1 mRNA upstream 87285 2390884 ~ 2406287 (+) False gas6
XM_043236065.1 mRNA downstream 12552 2511572 ~ 2518385 (+) True pcid2
XM_043248050.1 mRNA downstream 53739 2552759 ~ 2558527 (+) False setdb2
XM_043248058.1 mRNA downstream 53739 2552759 ~ 2558295 (+) False setdb2
XM_043242543.1 mRNA downstream 62337 2561357 ~ 2564419 (+) True creg1
XM_043242553.1 mRNA downstream 65526 2564546 ~ 2573977 (+) False cd247
TU731 other upstream 7584 2483673 ~ 2485988 (+) False grtp1a
TU616 other upstream 301108 2185859 ~ 2192464 (+) True cyyr1
TU311 other upstream 1051906 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 1052133 1439073 ~ 1441439 (+) False LOC122327253
TU718 other downstream 12701 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 25505 2524525 ~ 2527244 (+) True G474
TU717 other downstream 95911 2594931 ~ 2596302 (+) True G482
XR_006252051.1 other downstream 243059 2742079 ~ 2742212 (+) True LOC122353699
TU1095 other downstream 835638 3334658 ~ 3340876 (+) True G727

Expression Profile