RNA id: XM_043244943.1


Basic Information

Item Value
RNA id XM_043244943.1
length 1327
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC122348945
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1456086 ~ 1465285 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACAGGCTCTTACCAAATTAAATCAGCCATTCCGGCTGCACAAAGAAACAagcaaaagacatttttatgcatgcagAGAAAGCATTCGAGAAGCTGATTTGATTTGTGAGACATGTGAAAGCAGTCTATCTGCAGCGGTTTTTCACGATGGCTTGGTTTGACGTAGCAGCTAAGAAACTGGGCTTTCCTAGCATTGAGCTGTTCGTGAAGgcCGGCAGCGACGGGGAGAGCATCGGGAACTGTCCGTTCTCTCAGAGACTCTTCATGATCCTCTGGCTGAAAGGAGTCATCTTCAACGTCACCACTGTGGACCTCAAGAGAAAGCCGGCGGATCTTCAGGATCTCGCTCCGGGAACCAACCCTCCGTTCATGACCTTCAACGGAGAGGTGCTGGTGGATGTCAACAAGATCGAAGAGTTTCTCGAGGAGCGACTGGTCCCACCGCGATACCCAAAGTTGGCAGCGAAGCATCCAGAATCCAACACAGCGGGGATAGATGTATTTGCCAAGTTTTCTGCCTACATCAAGAACCCCCGTAAAGAAACTAACGAGGGTCTGGAGAAAGCTCTTCTGAAGTCTCTGAAGAGGTTGGATGAGTATTTGCAGACGCCGCTGACCGATGAAATAGATGCCAACGGCGTGGATGATCCCGGCGTGTCCAGACGCAGTTTTCTGGATGGACCTGACCTCACGCTGGCCGACTGCAACCTGCTGCCCAAACTACACATCATCAAGATCGTTGCCAAGAAGTACAGGAGTTTTGAGATTCCTGCTGACTTGACCGGGGTTTGGCGATATATGAACAACGCCTACAAGAGAGAGGAGTTCATGAACACCTGCCCTGCTGAGCGAGAGATCGAGTTCGCCTACCTGGACGTCGCCAAAAAGATCAAATAGTTCAGGATGATGAGACAAGTagtgctagtgtgtgtgtgcattggcgtctgtggtttatggggacaccaATTAGTTTAATCACGTGGGTATTACAttctgaaggtggtttatgaggacaccgCCAATTTAAATGGCGTTTTTGAAAGTTTCCTGcagattttacagtataaaaaccattacgcctttggagagtccccataaaacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcgctcactGGTGGAGCTGCACTATGCTACATTGATCACAAATCAGTAGACTGGCATACGTTTTCCTTCAATCAATGGCGGGACCAGGAAAATAGTTTAAGACCAGACACAGAGATAAAATCCTCTTTAACGATCAATCTGTCTTCATATattacacagacagacatgatATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251676.1 lncRNA upstream 58609 1357834 ~ 1402615 (+) True LOC122350990
TU288 lncRNA upstream 62250 1396899 ~ 1398974 (+) True G203
TU306 lncRNA upstream 77194 1383753 ~ 1384030 (+) True G217
TU296 lncRNA upstream 124879 1329595 ~ 1336345 (+) True G207
TU245 lncRNA upstream 242490 1218065 ~ 1218734 (+) True G175
TU321 lncRNA downstream 2200 1467485 ~ 1468131 (+) True G227
TU396 lncRNA downstream 19861 1485146 ~ 1485643 (+) True G270
TU401 lncRNA downstream 76037 1541322 ~ 1611176 (+) True G273
TU469 lncRNA downstream 440367 1905652 ~ 1905963 (+) True G312
TU476 lncRNA downstream 465372 1930657 ~ 1991767 (+) True G318
XM_043222498.1 mRNA upstream 19753 1439040 ~ 1441471 (+) False LOC122327253
XM_043222583.1 mRNA upstream 19753 1439040 ~ 1441471 (+) False LOC122327253
XM_043247574.1 mRNA upstream 114431 1334924 ~ 1346793 (+) False LOC122350806
XM_043245929.1 mRNA downstream 59822 1525107 ~ 1570888 (+) False runx1
XM_043245920.1 mRNA downstream 59823 1525108 ~ 1570888 (+) False runx1
XM_043245937.1 mRNA downstream 86864 1552149 ~ 1570888 (+) True runx1
XM_043245945.1 mRNA downstream 86864 1552149 ~ 1570888 (+) False runx1
XM_043242418.1 mRNA downstream 109333 1574618 ~ 1583412 (+) True LOC122347221
TU311 other upstream 19558 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 19785 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 19785 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 340503 1119719 ~ 1120721 (+) True G136
TU24 other upstream 1283024 177716 ~ 178200 (+) True G10
TU616 other downstream 720574 2185859 ~ 2192464 (+) True cyyr1
TU731 other downstream 1018388 2483673 ~ 2485988 (+) False grtp1a
TU718 other downstream 1046436 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 1059240 2524525 ~ 2527244 (+) True G474
TU717 other downstream 1129646 2594931 ~ 2596302 (+) True G482

Expression Profile