Fish Single-cell RNA Database

CELL TYPE: Optic vesicle

Distribution of Optic vesicle in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000016691	cd9b	4: 4234994 ~ 4261673 (-)
ENSDARG00000019644	ldhba	4: 16828752 ~ 16836006 (-)
ENSDARG00000045694	prickle1b	4: 13963499 ~ 13995766 (-)
ENSDARG00000001910	rorab	7: 29538628 ~ 29625509 (-)
ENSDARG00000059950	plxdc2	7: 41517173 ~ 41627956 (-)
ENSDARG00000104227	nop10	7: 1505507 ~ 1508912 (+)
ENSDARG00000037362	scube2	7: 28569266 ~ 28611145 (-)
ENSDARG00000090444	ponzr1	7: 20344032 ~ 20369869 (+)
ENSDARG00000036044	rps20	7: 58745987 ~ 58750400 (+)
ENSDARG00000076933	aldh1a3	7: 9721385 ~ 9803154 (-)
ENSDARG00000077256	nat8l	7: 24457191 ~ 24472991 (-)
ENSDARG00000036036	mdka	7: 39166460 ~ 39178198 (+)
ENSDARG00000070107	six7	7: 7401692 ~ 7420301 (-)
ENSDARG00000105187	gcshb	7: 67451108 ~ 67463021 (+)
ENSDARG00000045936	pax6b	7: 15871156 ~ 15900606 (+)
ENSDARG00000015524	prps1a	5: 23136544 ~ 23147665 (+)
ENSDARG00000103515	vcana	5: 46424437 ~ 46486028 (+)
ENSDARG00000052846	fsta	5: 40504910 ~ 40510399 (-)
ENSDARG00000104100	bmpr1ba	5: 7488064 ~ 7712160 (-)
ENSDARG00000051783	rplp0	5: 1950660 ~ 1963498 (-)
ENSDARG00000094561	si:ch211-139a5.9	5: 37884022 ~ 37886077 (-)
ENSDARG00000031761	dab2	5: 32323775 ~ 32338872 (-)
ENSDARG00000039887	c1qbp	5: 3914403 ~ 3927763 (-)
ENSDARG00000029179	foxd1	5: 34997763 ~ 34999553 (+)
ENSDARG00000014817	ranbp1	5: 19006701 ~ 19014589 (-)
ENSDARG00000013730	slc4a4a	5: 45746457 ~ 45877387 (-)
ENSDARG00000035521	sfrp1a	5: 27488975 ~ 27538745 (+)
ENSDARG00000020364	fbp1b	5: 35458190 ~ 35462126 (+)
ENSDARG00000013853	lmo4a	5: 32924669 ~ 32962023 (+)
ENSDARG00000018025	tbx2a	5: 56504717 ~ 56513825 (-)
ENSDARG00000035133	pho	5: 62319217 ~ 62335694 (+)
ENSDARG00000105068	NA	3: 36424055 ~ 36425851 (+)
ENSDARG00000025757	tspan35	3: 14611299 ~ 14638399 (+)
ENSDARG00000102565	vasnb	3: 12440099 ~ 12487576 (+)
ENSDARG00000089749	aqp8b	3: 18572279 ~ 18575868 (-)
ENSDARG00000025301	gfap	3: 31792441 ~ 31804481 (-)
ENSDARG00000038066	kpna2	3: 25369965 ~ 25377163 (-)
ENSDARG00000098578	pdgfab	3: 12924930 ~ 12970428 (-)
ENSDARG00000077467	sox10	3: 1492174 ~ 1501255 (+)
ENSDARG00000010246	prmt1	3: 32356833 ~ 32363021 (-)
ENSDARG00000027196	si:dkey-16l2.17	3: 32689707 ~ 32696592 (+)
ENSDARG00000013307	rpl19	3: 16229911 ~ 16232442 (+)
ENSDARG00000038768	mrpl12	3: 50054187 ~ 50066528 (-)
ENSDARG00000040072	scpep1	3: 36127287 ~ 36138174 (+)
ENSDARG00000097523	si:ch73-364h19.1	3: 60146309 ~ 60175470 (-)
ENSDARG00000017590	nit2	6: 37431169 ~ 37441520 (-)
ENSDARG00000074242	serbp1a	6: 34931597 ~ 34938746 (-)
ENSDARG00000070047	rgs4	6: 35362225 ~ 35366944 (+)
ENSDARG00000057633	cxcr4a	6: 12922002 ~ 12923727 (+)
ENSDARG00000092660	cyp27c1	6: 9568149 ~ 9581949 (-)
ENSDARG00000052099	agxta	6: 27112884 ~ 27123327 (-)
ENSDARG00000104353	nop58	6: 9664206 ~ 9695294 (-)
ENSDARG00000044521	eef1b2	6: 13189563 ~ 13206255 (-)
ENSDARG00000039578	pa2g4a	6: 7533601 ~ 7551140 (+)
ENSDARG00000097193	si:dkey-28n18.9	6: 40422224 ~ 40429414 (-)
ENSDARG00000029252	ssb	6: 3716666 ~ 3728694 (+)
ENSDARG00000040321	rx2	2: 55833425 ~ 55861351 (-)
ENSDARG00000011166	cahz	2: 29477383 ~ 29485408 (-)
ENSDARG00000001721	oc90	2: 42942552 ~ 42960353 (-)
ENSDARG00000102291	eef1da	2: 50999477 ~ 51032888 (+)
ENSDARG00000010267	dpydb	2: 19824190 ~ 20120904 (-)
ENSDARG00000102808	calr3b	2: 55783896 ~ 55797318 (-)
ENSDARG00000110020	zgc:56628	2: 22409249 ~ 22415196 (+)
ENSDARG00000040306	otomp	2: 41504752 ~ 41518340 (-)
ENSDARG00000016706	atic	1: 5437390 ~ 5504130 (+)
ENSDARG00000061985	rbm47	1: 19353048 ~ 19402815 (-)
ENSDARG00000015266	mab21l2	1: 24076243 ~ 24078099 (+)
ENSDARG00000069595	si:ch211-214c7.4	1: 45707219 ~ 45744854 (+)
ENSDARG00000027199	smad1	1: 35896488 ~ 35929143 (-)
ENSDARG00000007941	hmx4	1: 40909750 ~ 40911332 (-)
ENSDARG00000095651	hmx1	1: 40912613 ~ 40914752 (-)
ENSDARG00000034093	dclk2a	1: 37195465 ~ 37310490 (+)
ENSDARG00000019986	grhprb	1: 19835803 ~ 19845539 (-)
ENSDARG00000005525	acy3.2	1: 52489962 ~ 52498146 (-)
ENSDARG00000001870	atp1a1a.4	1: 1689775 ~ 1706159 (+)
ENSDARG00000031952	mb	1: 55137943 ~ 55145085 (+)
ENSDARG00000017591	fat1a	1: 17376922 ~ 17524922 (+)
ENSDARG00000076480	mcf2lb	9: 29581662 ~ 29616590 (+)
ENSDARG00000022261	pdzk1	9: 5862040 ~ 5892075 (+)
ENSDARG00000062549	acmsd	9: 23244292 ~ 23253870 (-)
ENSDARG00000020164	efnb2a	9: 26103814 ~ 26127305 (+)
ENSDARG00000056167	hspe1	9: 32301017 ~ 32305007 (+)
ENSDARG00000056160	hspd1	9: 32286605 ~ 32300783 (-)
ENSDARG00000039373	epha3	9: 16449398 ~ 16618607 (+)
ENSDARG00000043304	nop2	16: 17234540 ~ 17251898 (-)
ENSDARG00000094730	acbd7	16: 28596555 ~ 28599328 (+)
ENSDARG00000033172	nr2f5	16: 46294337 ~ 46327301 (+)
ENSDARG00000004964	cyp4t8	16: 4615661 ~ 4640578 (-)
ENSDARG00000029259	zgc:136493	16: 25394763 ~ 25400257 (-)
ENSDARG00000079543	dpys	16: 44298902 ~ 44325688 (+)
ENSDARG00000005112	cdh17	16: 26774182 ~ 26802798 (+)
ENSDARG00000053912	fbl	16: 42177659 ~ 42186093 (-)
ENSDARG00000015866	apoa2	16: 23978978 ~ 23980354 (+)
ENSDARG00000042010	pklr	16: 54450407 ~ 54455573 (-)
ENSDARG00000033539	paics	20: 25618114 ~ 25631256 (-)
ENSDARG00000018921	lratd1	20: 32756763 ~ 32758949 (+)
ENSDARG00000006837	mycn	20: 33294428 ~ 33299384 (+)
ENSDARG00000042566	rps7	20: 30372352 ~ 30377221 (-)
ENSDARG00000018693	cdh2	20: 17581881 ~ 17819238 (+)
ENSDARG00000041895	cad	20: 38788319 ~ 38827623 (-)
ENSDARG00000030905	cited2	20: 36915143 ~ 36917670 (-)
ENSDARG00000041799	cx43	20: 40715163 ~ 40720530 (-)
ENSDARG00000056331	ahcyl1	8: 24971890 ~ 25011157 (-)
ENSDARG00000053133	b3gnt7l	8: 22289320 ~ 22290886 (+)
ENSDARG00000020114	slc20a1a	8: 31057115 ~ 31075015 (-)
ENSDARG00000031222	lhx2b	8: 3085120 ~ 3101392 (+)
ENSDARG00000042533	gstm.1	8: 25295160 ~ 25297928 (+)
ENSDARG00000094887	si:ch211-170d8.2	8: 39795918 ~ 39798142 (+)
ENSDARG00000024540	tspan36	8: 29726620 ~ 29734951 (+)
ENSDARG00000005518	slc5a9	8: 15254564 ~ 15268932 (+)
ENSDARG00000093549	selenop	8: 31435452 ~ 31443334 (+)
ENSDARG00000043716	cldn5a	8: 4697764 ~ 4699320 (+)
ENSDARG00000011521	upb1	8: 30699429 ~ 30730675 (+)
ENSDARG00000074756	tfb2m	17: 12058509 ~ 12073355 (+)
ENSDARG00000087554	cdk1	17: 20923691 ~ 20929461 (+)
ENSDARG00000024160	hao1	17: 4030493 ~ 4063581 (+)
ENSDARG00000005574	vsx2	17: 31652640 ~ 31659670 (-)
ENSDARG00000057452	ston2	17: 16755287 ~ 16808413 (+)
ENSDARG00000022995	clic4	17: 25444323 ~ 25480375 (+)
ENSDARG00000074809	zgc:194392	17: 30700627 ~ 30702411 (-)
ENSDARG00000020944	ezra	17: 45413324 ~ 45452116 (+)
ENSDARG00000077264	wdr43	17: 24821627 ~ 24835683 (+)
ENSDARG00000006840	gnmt	17: 48920799 ~ 48936123 (-)
ENSDARG00000032617	fgfrl1a	14: 17442913 ~ 17563773 (-)
ENSDARG00000039966	prom1a	14: 46456091 ~ 46617228 (-)
ENSDARG00000101569	ppargc1b	14: 24934736 ~ 25001584 (+)
ENSDARG00000053684	aldob	14: 21106444 ~ 21121199 (+)
ENSDARG00000071336	mif	14: 48960078 ~ 48970210 (+)
ENSDARG00000098475	arr3b	14: 32837914 ~ 32850768 (+)
ENSDARG00000037307	gnpda1	14: 23709134 ~ 23715349 (+)
ENSDARG00000037488	canx	14: 16432738 ~ 16476863 (-)
ENSDARG00000039064	st3gal7	13: 40716319 ~ 40726865 (-)
ENSDARG00000090337	pprc1	13: 12007904 ~ 12021566 (-)
ENSDARG00000039304	six1a	13: 31619961 ~ 31622195 (-)
ENSDARG00000058008	six3a	13: 10258007 ~ 10261383 (-)
ENSDARG00000076895	flrt3	13: 33811842 ~ 33822550 (-)
ENSDARG00000012078	meis1b	13: 5490551 ~ 5569562 (-)
ENSDARG00000031483	col9a1b	13: 39119460 ~ 39160018 (-)
ENSDARG00000039041	sfrp5	13: 39911551 ~ 39947335 (-)
ENSDARG00000103163	tomm20a	13: 49541003 ~ 49586255 (-)
ENSDARG00000088709	tnfaip8l3	18: 39522468 ~ 39583601 (-)
ENSDARG00000057286	swap70b	18: 16876833 ~ 16916840 (-)
ENSDARG00000028336	dhdhl	18: 970246 ~ 977075 (-)
ENSDARG00000101844	mibp2	18: 5490668 ~ 5497405 (+)
ENSDARG00000056247	bricd5	12: 18551597 ~ 18560500 (-)
ENSDARG00000023299	snu13b	12: 10443785 ~ 10447178 (+)
ENSDARG00000000068	slc9a3r1a	12: 33484458 ~ 33537126 (+)
ENSDARG00000071601	pvalb9	12: 17695986 ~ 17698669 (-)
ENSDARG00000054879	six3b	12: 25600685 ~ 25603341 (+)
ENSDARG00000007597	bloc1s4	19: 25679538 ~ 25693728 (-)
ENSDARG00000021864	rplp1	19: 1852078 ~ 1855368 (-)
ENSDARG00000036090	pard6gb	19: 25699329 ~ 25772980 (-)
ENSDARG00000070480	agr2	19: 30400372 ~ 30404096 (-)
ENSDARG00000017299	fabp11a	19: 32166702 ~ 32169161 (+)
ENSDARG00000032849	ndrg1a	19: 34959967 ~ 34979837 (-)
ENSDARG00000035882	rida	19: 32822269 ~ 32884513 (+)
ENSDARG00000078522	si:ch211-80h18.1	19: 3086851 ~ 3127290 (-)
ENSDARG00000024492	col9a2	19: 38422059 ~ 38467554 (+)
ENSDARG00000035694	stm	19: 3137518 ~ 3167878 (-)
ENSDARG00000103791	nme2b.1	19: 48117388 ~ 48120285 (+)
ENSDARG00000012968	rhoub	15: 8990577 ~ 9002155 (-)
ENSDARG00000069888	cldna	15: 2655566 ~ 2657508 (-)
ENSDARG00000006120	tbx2b	15: 27364394 ~ 27371340 (+)
ENSDARG00000102047	mab21l1	15: 33070939 ~ 33073200 (+)
ENSDARG00000003963	traf4a	15: 15516612 ~ 15593263 (+)
ENSDARG00000099361	si:dkey-30e9.6	15: 34062460 ~ 34067297 (+)
ENSDARG00000078748	si:ch211-137a8.4	15: 29085955 ~ 29091807 (+)
ENSDARG00000061383	serpinf2b	15: 26540981 ~ 26552652 (-)
ENSDARG00000043446	efhd1	15: 40188076 ~ 40212204 (+)
ENSDARG00000101324	apoa1b	15: 102925 ~ 108414 (-)
ENSDARG00000006019	tktb	23: 20113378 ~ 20126257 (-)
ENSDARG00000088040	si:dkeyp-27c8.2	23: 40755764 ~ 40766518 (-)
ENSDARG00000041644	si:dkey-194e6.1	23: 40872688 ~ 40895168 (-)
ENSDARG00000095453	si:rp71-17i16.6	23: 20340200 ~ 20345473 (-)
ENSDARG00000039007	eno3	23: 44611864 ~ 44625579 (+)
ENSDARG00000000588	grasp	23: 32199588 ~ 32236122 (-)
ENSDARG00000036875	rps12	23: 31431956 ~ 31435922 (+)
ENSDARG00000005513	naca	23: 17865554 ~ 17876777 (+)
ENSDARG00000004218	rnd1b	23: 26979174 ~ 27006062 (+)
ENSDARG00000003219	bin2a	23: 33739215 ~ 33753361 (-)
ENSDARG00000111188	cdaa	23: 37458602 ~ 37466323 (+)
ENSDARG00000069980	lman1	21: 10701834 ~ 10732281 (+)
ENSDARG00000052893	rx3	21: 10756154 ~ 10759223 (+)
ENSDARG00000012820	nop56	21: 11958758 ~ 11970199 (-)
ENSDARG00000015955	cldnc	21: 25754268 ~ 25756119 (-)
ENSDARG00000010717	chchd10	21: 15704556 ~ 15708626 (+)
ENSDARG00000029832	slc26a1	21: 20324562 ~ 20329541 (-)
ENSDARG00000089790	efna5a	21: 20488662 ~ 20636817 (+)
ENSDARG00000070844	gamt	11: 5855923 ~ 5865744 (-)
ENSDARG00000006219	gnl3	11: 3959495 ~ 3971035 (+)
ENSDARG00000061120	slc43a2b	10: 24371921 ~ 24391716 (-)
ENSDARG00000014329	npm1a	10: 22034477 ~ 22045119 (+)
ENSDARG00000068992	hspa8	10: 29849497 ~ 29858018 (+)
ENSDARG00000044261	si:ch211-243g18.2	10: 9550419 ~ 9571012 (+)
ENSDARG00000086996	si:ch73-234b20.5	10: 4987766 ~ 4996049 (+)
ENSDARG00000045695	myca	24: 10413484 ~ 10416284 (+)
ENSDARG00000015567	zic1	24: 4970580 ~ 4973765 (-)
ENSDARG00000090230	tmem108	24: 9744012 ~ 9873206 (+)
ENSDARG00000062758	CR352265.1	24: 21813127 ~ 21819010 (-)
ENSDARG00000002710	ncl	22: 36673312 ~ 36690751 (-)
ENSDARG00000071684	rx1	22: 4997784 ~ 5006801 (-)
ENSDARG00000043180	gpd1b	22: 6996046 ~ 7006974 (-)
ENSDARG00000007421	ftcd	22: 12770877 ~ 12786532 (+)
ENSDARG00000056979	lhx9	22: 23238790 ~ 23253481 (-)
ENSDARG00000043242	si:dkey-222f2.1	22: 5727753 ~ 5739360 (+)
ENSDARG00000018944	hoga1	22: 34710036 ~ 34732882 (+)
ENSDARG00000109371	pdgfaa	22: 26085343 ~ 26100282 (-)
ENSDARG00000051874	stra6	25: 22571475 ~ 22634675 (+)
ENSDARG00000103379	pax6a	25: 15029041 ~ 15049781 (-)
ENSDARG00000063905	mt-co1	MT: 6425 ~ 7975 (+)
ENSDARG00000063908	mt-co2	MT: 8130 ~ 8820 (+)
ENSDARG00000063912	mt-co3	MT: 9735 ~ 10520 (+)
--	ac024175.4	--
--	atp5b	--
--	atp5g3b	--
--	cabz01086806.1	--
--	pvrl3b	--
--	shisa2	--
--	si:ch211-229g11.6	--
--	si:ch73-52f24.4	--
--	tle2	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Optic vesicle.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
PRJNA564810 (2dpf)	Danio rerio	embryo	22	Optic vesicle	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000001870 (atp1a1a.4)	marker	DOI:10.1093/g3journal/jkac062
GSE158142 (12hpf)	Danio rerio	head	3	Optic vesicle	baseline	12hpf, 6 somites, untreatment	ENSDARG00000040321 (rx2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	3	Optic vesicle	baseline	12hpf, 6 somites, untreatment	ENSDARG00000000588 (grasp)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	3	Optic vesicle	baseline	12hpf, 6 somites, untreatment	ENSDARG00000007941 (hmx4)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	3	Optic vesicle	baseline	12hpf, 6 somites, untreatment	ENSDARG00000056979 (lhx9)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (14hpf)	Danio rerio	head	4	Optic vesicle	baseline	14hpf, 10 somites, untreatment	ENSDARG00000071684 (rx1)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (14hpf)	Danio rerio	head	4	Optic vesicle	baseline	14hpf, 10 somites, untreatment	ENSDARG00000040321 (rx2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (16hpf)	Danio rerio	head	4	Optic vesicle	baseline	16hpf, 14 somites, untreatment	ENSDARG00000071684 (rx1)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (16hpf)	Danio rerio	head	4	Optic vesicle	baseline	16hpf, 14 somites, untreatment	ENSDARG00000005574 (vsx2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (16hpf)	Danio rerio	head	4	Optic vesicle	baseline	16hpf, 14 somites, untreatment	ENSDARG00000040321 (rx2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	6	Optic vesicle	baseline	18hpf, 18 somites, untreatment	ENSDARG00000071684 (rx1)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	6	Optic vesicle	baseline	18hpf, 18 somites, untreatment	ENSDARG00000005574 (vsx2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	7	Optic vesicle	baseline	18hpf, 18 somites, untreatment	ENSDARG00000071684 (rx1)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	7	Optic vesicle	baseline	18hpf, 18 somites, untreatment	ENSDARG00000005574 (vsx2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	7	Optic vesicle	baseline	18hpf, 18 somites, untreatment	ENSDARG00000040321 (rx2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (20hpf)	Danio rerio	head	4	Optic vesicle	baseline	20hpf, 21-22 somites, untreatment	ENSDARG00000071684 (rx1)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (20hpf)	Danio rerio	head	4	Optic vesicle	baseline	20hpf, 21-22 somites, untreatment	ENSDARG00000005574 (vsx2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (20hpf)	Danio rerio	head	4	Optic vesicle	baseline	20hpf, 21-22 somites, untreatment	ENSDARG00000029179 (foxd1)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (24hpf)	Danio rerio	head	14	Optic vesicle	baseline	24hpf, untreatment	ENSDARG00000040306 (otomp)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (24hpf)	Danio rerio	head	14	Optic vesicle	baseline	24hpf, untreatment	ENSDARG00000056247 (bricd5)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (24hpf)	Danio rerio	head	14	Optic vesicle	baseline	24hpf, untreatment	ENSDARG00000001870 (atp1a1a.4)	marker	DOI:10.1016/j.neuron.2020.09.023

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

CELL TYPE: Optic vesicle

Distribution of Optic vesicle in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences