DATASET ID: GSE150498 (wildtype, 1X DSS)

Basic information

Tissue / Organ intestine
Experiment type disease
Sample 6dpf, wildtype, 1X DSS
Source dataset ID GSM4878624
Project ID GSE150498
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    2 Brush border cells ENSDARG00000103342 (wu:fa56d06) protein_coding marker DOI:10.1038/s41586-021-03484-5
    3 Smooth muscle cells ENSDARG00000030980 (csrp1b) protein_coding marker DOI:10.1038/s41586-021-03484-5
    3 Smooth muscle cells ENSDARG00000086391 (cald1b) protein_coding marker DOI:10.1038/s41586-021-03484-5
    4 Epithelial cells ENSDARG00000016691 (cd9b) protein_coding marker DOI:10.1038/s41586-021-03484-5
    5 Squamous epithelial ENSDARG00000014488 (ca2) protein_coding marker DOI:10.1038/s41586-021-03484-5
    6 Enteroendocrine -- (zgc:153845) -- marker DOI:10.1038/s41586-021-03484-5
    7 Chondrocytes ENSDARG00000073699 (col9a1a) protein_coding marker DOI:10.1038/s41586-021-03484-5
    7 Chondrocytes ENSDARG00000093381 (tgm2l) protein_coding marker DOI:10.1038/s41586-021-03484-5
    7 Chondrocytes ENSDARG00000059391 (gyg1b) protein_coding marker DOI:10.1038/s41586-021-03484-5
    8 Proliferative myeloid + ILC ENSDARG00000026350 (wasb) protein_coding marker DOI:10.1038/s41586-021-03484-5
    9 Fibroblasts ENSDARG00000093572 (lamc3) protein_coding marker DOI:10.1038/s41586-021-03484-5
    10 Enteroendocrine + ILC3 ENSDARG00000004015 (adcyap1a) protein_coding marker DOI:10.1038/s41586-021-03484-5
    11 Stromal ENSDARG00000013266 (colec11) protein_coding marker DOI:10.1038/s41586-021-03484-5
    12 Stromal ENSDARG00000034588 (scn4ab) protein_coding marker DOI:10.1038/s41586-021-03484-5
    14 Endothelium ENSDARG00000060263 (pecam1) protein_coding marker DOI:10.1038/s41586-021-03484-5

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)