DATASET ID: PRJNA608912 (wt_14dpi)

Basic information

Tissue / Organ heart
Experiment type regeneration
Sample 5mpf, wild type, 14 days post injury
Source dataset ID SRR11186452
Project ID PRJNA608912
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Endocardial endothelial cells ENSDARG00000070266 (spock3) protein_coding marker DOI:10.15252/embr.202152901
    1 Endocardial endothelial cells ENSDARG00000045141 (aqp8a.1) protein_coding marker DOI:10.15252/embr.202152901
    2 Heart primordium ENSDARG00000019096 (myl7) protein_coding marker DOI:10.15252/embr.202152901
    3 Fibroblasts ENSDARG00000036869 (tcf21) protein_coding marker DOI:10.1242/dev.067041, DOI:10.1161/CIRCRESAHA.109.201400, , DOI:10.15252/embr.202152901
    3 Fibroblasts ENSDARG00000006526 (fn1b) protein_coding marker DOI:10.1016/j.ydbio.2013.08.012, DOI:10.15252/embr.202152901
    3 Fibroblasts ENSDARG00000012405 (col1a1a) protein_coding marker DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    4 Endocardial endothelial cells ENSDARG00000070266 (spock3) protein_coding marker DOI:10.15252/embr.202152901
    4 Endocardial endothelial cells ENSDARG00000045141 (aqp8a.1) protein_coding marker DOI:10.15252/embr.202152901
    5 Fibroblasts ENSDARG00000006526 (fn1b) protein_coding marker DOI:10.1016/j.ydbio.2013.08.012, DOI:10.15252/embr.202152901
    5 Fibroblasts ENSDARG00000012405 (col1a1a) protein_coding marker DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    6 Macrophages ENSDARG00000090783 (mfap4) protein_coding marker DOI:10.1371/journal.pone.0138949, DOI:10.15252/embr.202152901
    6 Macrophages ENSDARG00000044612 (c1qb) protein_coding marker DOI:10.15252/embr.202152901
    6 Macrophages ENSDARG00000009087 (cd74a) protein_coding marker DOI:10.15252/embr.202152901
    7 Immune cells ENSDARG00000020788 (sla2) protein_coding marker DOI:10.15252/embr.202152901
    7 Immune cells ENSDARG00000105263 (ccl36.1) protein_coding marker DOI:10.15252/embr.202152901
    7 Immune cells ENSDARG00000041959 (cxcr4b) protein_coding marker DOI:10.15252/embr.202152901
    8 Mesenchymal cells ENSDARG00000027582 (angptl7) protein_coding marker DOI:10.1186/s12862-016-0859-x, DOI:10.15252/embr.202152901
    8 Mesenchymal cells ENSDARG00000104340 (rspo1) protein_coding marker DOI:10.1242/dev.068460, DOI:10.15252/embr.202152901
    8 Mesenchymal cells ENSDARG00000086189 (mgp) protein_coding marker DOI:10.15252/embr.202152901
    11 Erythroid cells ENSDARG00000011166 (cahz) protein_coding marker DOI:10.1182/bloodadvances.2018020156, DOI:10.15252/embr.202152901
    11 Erythroid cells ENSDARG00000012881 (slc4a1a) protein_coding marker DOI:10.1038/ng1137, DOI:10.15252/embr.202152901

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)