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| Tissue / Organ | embryo |
| Experiment type | baseline |
| Sample | 2dpf, a single-cell transcriptome atlas for zebrafish development |
| Source dataset ID | SRR10095966 |
| Project ID | PRJNA564810 |
| Species | Danio rerio |
| Cluster | Cell type | Gene id (symbol) | Gene type | Marker class | Evidence |
|---|---|---|---|---|---|
| 1 | Neuron | ENSDARG00000027740 (adcyap1b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 1 | Neuron | ENSDARG00000056092 (si:dkey-12h9.6) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 1 | Neuron | ENSDARG00000018259 (atp1a3a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 1 | Neuron | ENSDARG00000014018 (lhx1a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 2 | Neuroblast | ENSDARG00000010770 (sox19a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 3 | Neuroblast | ENSDARG00000010770 (sox19a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 4 | Neuron | ENSDARG00000068168 (hes2.2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 4 | Neuron | ENSDARG00000069552 (atoh7) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 4 | Neuron | ENSDARG00000010385 (sept4a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 4 | Neuron | ENSDARG00000014059 (cldn5b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 5 | Chondrocytes | ENSDARG00000073699 (col9a1a) | protein_coding | marker | DOI:10.7554/eLife.16415 |
| 6 | Cranial neural crest | ENSDARG00000105223 (pmp22a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 6 | Cranial neural crest | ENSDARG00000007407 (barx1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 6 | Cranial neural crest | ENSDARG00000011956 (dlx4a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 6 | Cranial neural crest | ENSDARG00000038056 (fgfbp2b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 6 | Cranial neural crest | ENSDARG00000059073 (gsc) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 7 | Neuron | ENSDARG00000025495 (nhlh2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 7 | Neuron | ENSDARG00000100821 (scrt1a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 7 | Neuron | ENSDARG00000091756 (insm1a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 7 | Neuron | ENSDARG00000102976 (uncx) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 8 | Neuron | ENSDARG00000053364 (pax10) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 8 | Neuron | ENSDARG00000031316 (six6b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 8 | Neuron | ENSDARG00000032705 (foxg1b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 8 | Neuron | ENSDARG00000004023 (isl1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 9 | Hematopoietic cells | ENSDARG00000096667 (hemgn) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 9 | Hematopoietic cells | ENSDARG00000038643 (alas2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 9 | Hematopoietic cells | ENSDARG00000034852 (nt5c2l1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 9 | Hematopoietic cells | ENSDARG00000029019 (epb41b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 9 | Hematopoietic cells | ENSDARG00000044550 (hif1al2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 9 | Hematopoietic cells | ENSDARG00000013477 (gata1a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 10 | Neuron | ENSDARG00000011989 (crx) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 10 | Neuron | ENSDARG00000043483 (otx5) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 10 | Neuron | ENSDARG00000037921 (gng13b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 10 | Neuron | ENSDARG00000010420 (ndrg1b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 11 | Neuron | ENSDARG00000015537 (gad2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 12 | Somites | ENSDARG00000009438 (myog) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 12 | Somites | ENSDARG00000030110 (myod1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 12 | Somites | ENSDARG00000079071 (jam2b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 12 | Somites | ENSDARG00000058996 (jam2a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 12 | Somites | ENSDARG00000010478 (hsp90aa1.1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 13 | Epidermal cells | ENSDARG00000102750 (cdh1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 14 | Neuron | ENSDARG00000101984 (pde6gb) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 14 | Neuron | ENSDARG00000043483 (otx5) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 14 | Neuron | ENSDARG00000011989 (crx) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 14 | Neuron | ENSDARG00000010680 (gngt2a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 15 | Epidermal cells | ENSDARG00000040534 (epcam) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 16 | Epidermal cells | ENSDARG00000102750 (cdh1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 17 | Skeletal muscle cells | ENSDARG00000020574 (atp2a1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 18 | Somites | ENSDARG00000103443 (vwde) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 18 | Somites | ENSDARG00000105380 (fgl1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 18 | Somites | ENSDARG00000007891 (meox1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 18 | Somites | ENSDARG00000020072 (thbs4b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 19 | Cranial neural crest | ENSDARG00000058005 (hgd) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 19 | Cranial neural crest | ENSDARG00000044935 (hpdb) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 19 | Cranial neural crest | ENSDARG00000011693 (ttc36) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 20 | Skeletal muscle cells | ENSDARG00000011615 (mybpc3) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 20 | Skeletal muscle cells | ENSDARG00000045822 (tnnt2e) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 20 | Skeletal muscle cells | ENSDARG00000073766 (tnni1d) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 20 | Skeletal muscle cells | ENSDARG00000005139 (hhatlb) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 20 | Skeletal muscle cells | ENSDARG00000114031 (smyhc3) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 21 | Melanophores | ENSDARG00000056151 (tyrp1b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 22 | Optic vesicle | ENSDARG00000001870 (atp1a1a.4) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 23 | Lens | ENSDARG00000037402 (lim2.3) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 24 | Monocytes | ENSDARG00000090873 (ccl34a.4) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 25 | Xanthophores | ENSDARG00000093957 (si:dkey-251i10.2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 25 | Xanthophores | ENSDARG00000056028 (slc22a7a) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 25 | Xanthophores | ENSDARG00000063288 (slc2a11b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 25 | Xanthophores | ENSDARG00000103789 (tmem130) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 25 | Xanthophores | ENSDARG00000028257 (cyb561a3b) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 26 | Endothelium | ENSDARG00000060263 (pecam1) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 27 | Cranial neural crest | ENSDARG00000012422 (col11a2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
| 28 | Erythroid cells | ENSDARG00000045143 (hbbe2) | protein_coding | marker | DOI:10.1093/g3journal/jkac062 |
