Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
hbbe2 | 12: 20349865 ~ 20350629 (-) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Erythroid cells (cluster: 28) |
marker |
DOI:10.1093/g3journal/jkac062 |
|
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development |
Erythroid cells (cluster: 26) |
marker |
DOI:10.1093/g3journal/jkac062 |
|
GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment |
Erythroid cells (cluster: 15) |
marker |
DOI:10.1016/j.neuron.2020.09.023 |
|
GSE158142 (2dpf) | head | baseline | 2dpf, untreatment |
Erythroid cells (cluster: 13) |
marker |
DOI:10.1016/j.neuron.2020.09.023 |
|
GSE158142 (3dpf) | head | baseline | 3dpf, untreatment |
Erythroid cells (cluster: 12) |
marker |
DOI:10.1016/j.neuron.2020.09.023 |
|
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment |
Erythroid cells (cluster: 11) |
potential marker |
NA |
|
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment |
Erythroid cells (cluster: 10) |
potential marker |
NA |
|
GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment |
Erythroid cells (cluster: 8) |
potential marker |
NA |
|
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Erythroid cells (cluster: 4) |
potential marker |
NA |
|
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Erythroid cells (cluster: 12) Erythroid cells (cluster: 3) |
potential marker potential marker |
NA NA |
|
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos |
Erythroid cells (cluster: 1) |
potential marker |
NA |
|
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Erythroid cells (cluster: 1) Erythroid cells (cluster: 2) |
potential marker potential marker |
NA NA |
|
GSE173972 (KO, ezh1-|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Erythroid cells (cluster: 1) |
potential marker |
NA |
|
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos | ||||
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Hematopoietic cells (cluster: 8) |
potential marker |
NA |
|
GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated | ||||
GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment | ||||
GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment |
Red blood cells (cluster: 12) |
potential marker |
NA |
|
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells |
Erythroid cells (cluster: 44) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- |
Erythroid cells (cluster: 3) |
potential marker |
NA |
|
GSE158099 (WT) | whole body | baseline | 6dpf, cd41:GFPlow-WT |
Erythroid cells (cluster: 3) |
potential marker |
NA |
|
GSE158099 (WT) | whole body | baseline | 10dpf, cd41:GFPlow-WT |
Erythroid cells (cluster: 8) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- |
Erythroid cells (cluster: 4) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
HSPCs (cluster: 2) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
HSPCs (cluster: 1) HSPCs (cluster: 2) |
potential marker potential marker |
NA NA |
|
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish | ||||
GSE151354 (nkx3.2 mutant) | cartilage | growth | 21dpf, nkx3.2 mutant | ||||
GSE151354 (wild type) | cartilage | baseline | 21dpf, wild type | ||||
GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- | ||||
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ | ||||
GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells | ||||
PRJNA706197 (18hpf) | embryo | baseline | 18hpf, FACS sorted sox10:nEOS cells | ||||
PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells | ||||
PRJNA656271 (24hpf) | embryo | baseline | 24hpf, FACS-isolated EGFP+ cells | ||||
GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells | ||||
PRJNA656271 (1.5dpf) | embryo | baseline | 1.5dpf, FACS-isolated EGFP+ cells | ||||
GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment | ||||
GSE158142 (24hpf) | head | baseline | 24hpf, untreatment | ||||
GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment | ||||
GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment | ||||
PRJNA608912 (wt_7dpi) | heart | regeneration | 5mpf, wild type, 7 days post injury | ||||
PRJNA608912 (kit_2dpi) | heart | regeneration | 5mpf, kit mutant, 2 days post injury | ||||
PRJNA608912 (wt_unjuried) | heart | baseline | 5mpf, wild type, uninjured | ||||
PRJNA608912 (kit_7dpi) | heart | regeneration | 5mpf, kit mutant, 7 days post injury | ||||
PRJNA608912 (wt_14dpi) | heart | regeneration | 5mpf, wild type, 14 days post injury | ||||
PRJNA608912 (wt_2dpi) | heart | regeneration | 5mpf, wild type, 2 days post injury | ||||
PRJNA608912 (kit_14dpi) | heart | regeneration | 5mpf, kit mutant, 14 days post injury | ||||
PRJNA608912 (kit_uninjuried) | heart | regeneration | 5mpf, kit mutant, uninjured | ||||
PRJNA415636 (heart, blood) | heart, blood | baseline | adult, Zebrabow M, heart and blood | ||||
PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment | ||||
GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl | ||||
GSE123241 (fgf3 mutants) | neuromast | regeneration | 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory | ||||
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae | ||||
GSE123241 (fgf3 siblings) | neuromast | regeneration | 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory | ||||
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae | ||||
GSE123241 (wild type) | neuromast | baseline | 5dpf, wild type during sensory hair cell regeneration, lateral line sensory | ||||
GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis | ||||
PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet | ||||
GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment | ||||
GSE122680 (2dpf) | retina | baseline | 2dpf, WT, untreatment | ||||
PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) | ||||
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
PRJNA641144 (M_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo metastases | ||||
GSE159709 (melanoma) | tumor | disease | adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells | ||||
GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT |