Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
hbaa1 | 3: 55100045 ~ 55100936 (+) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
PRJNA415636 (heart, blood) | heart, blood | baseline | adult, Zebrabow M, heart and blood |
Erythroid cells (cluster: 2) |
marker |
DOI:10.1038/nbt.4124 |
|
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum |
Red blood cells (cluster: 15) |
potential marker |
NA |
|
PRJNA608912 (wt_unjuried) | heart | baseline | 5mpf, wild type, uninjured |
Erythroid cells (cluster: 10) |
potential marker |
NA |
|
PRJNA608912 (wt_2dpi) | heart | regeneration | 5mpf, wild type, 2 days post injury |
Erythroid cells (cluster: 13) |
potential marker |
NA |
|
PRJNA608912 (wt_7dpi) | heart | regeneration | 5mpf, wild type, 7 days post injury |
Erythroid cells (cluster: 12) |
potential marker |
NA |
|
PRJNA608912 (kit_uninjuried) | heart | regeneration | 5mpf, kit mutant, uninjured |
Erythroid cells (cluster: 14) |
potential marker |
NA |
|
PRJNA608912 (kit_2dpi) | heart | regeneration | 5mpf, kit mutant, 2 days post injury |
Erythroid cells (cluster: 14) |
potential marker |
NA |
|
PRJNA608912 (kit_7dpi) | heart | regeneration | 5mpf, kit mutant, 7 days post injury |
Erythroid cells (cluster: 8) |
potential marker |
NA |
|
PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment |
Erythroid cells (cluster: 13) |
potential marker |
NA |
|
GSE137784 (HCC, CreLox) | liver | disease | 6mpf, male, isolated from the zebrafish without HCC |
Erythroid cells (cluster: 11) |
potential marker |
NA |
|
GSE137784 (no HCC) | liver | baseline | 6mpf, male, isolated from the CreLox zebrafish with HCC |
Erythroid cells (cluster: 8) |
potential marker |
NA |
|
PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours | ||||
PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS | ||||
GSE159709 (melanoma) | tumor | disease | adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells |
Erythroid cells (cluster: 3) |
potential marker |
NA |
|
PRJNA641144 (P_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo primary tumors |
Melanoma cells (cluster: 7) |
potential marker |
NA |
|
PRJNA641144 (P_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vivo primary tumors |
Melanoma cells (cluster: 6) |
potential marker |
NA |
|
PRJNA641144 (M_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo metastases |
Melanoma cells (cluster: 6) |
potential marker |
NA |
|
PRJNA641144 (M_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vivo metastases |
Melanoma cells (cluster: 7) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
HSPCs (cluster: 2) |
potential marker |
NA |
|
PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain | ||||
GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment | ||||
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ||||
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ||||
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ | ||||
GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- | ||||
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development | ||||
GSE173972 (KO, ezh1-|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | ||||
GSE158849 (labeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (labeled) | ||||
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development | ||||
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos | ||||
GSE158849 (unlabeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (unlabeled) | ||||
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | ||||
GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells | ||||
GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment | ||||
GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment | ||||
PRJNA608912 (wt_14dpi) | heart | regeneration | 5mpf, wild type, 14 days post injury | ||||
PRJNA608912 (kit_14dpi) | heart | regeneration | 5mpf, kit mutant, 14 days post injury | ||||
PRJNA415636 (pancreas, liver) | hepatopancreas | baseline | adult, Zebrabow M, pancreas and liver | ||||
GSE137784 (HCC, HepABC) | liver | disease | 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC | ||||
PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days | ||||
GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis | ||||
GSE148591 (6mpf) | pituitary | baseline | 6mpf, male, Sox17:CreERT2 | ||||
PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet | ||||
PRJNA672101 (WT) | retina | baseline | 5mpf, three retinas from WT zebrafsih | ||||
GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg | ||||
PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih | ||||
PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) | ||||
PRJNA551501 (8mpf) | thyroid gland | baseline | 8mpf, Tg(tg:mVenus-T2A-NTR) | ||||
GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment | ||||
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (WT) | whole body | baseline | 10dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (WT) | whole body | baseline | 6dpf, cd41:GFPlow-WT | ||||
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | ||||
GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- |