DATASET ID: PRJNA564810 (1dpf)

Basic information

Tissue / Organ embryo
Experiment type baseline
Sample 1dpf, a single-cell transcriptome atlas for zebrafish development
Source dataset ID SRR10095968
Project ID PRJNA564810
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Neuroblast ENSDARG00000010770 (sox19a) protein_coding marker DOI:10.1093/g3journal/jkac062
    2 Neuroblast ENSDARG00000054879 (six3b) protein_coding marker DOI:10.1093/g3journal/jkac062
    3 Cranial neural crest ENSDARG00000039949 (fibina) protein_coding marker DOI:10.1093/g3journal/jkac062
    4 Neuron ENSDARG00000003469 (neurod4) protein_coding marker DOI:10.1093/g3journal/jkac062
    6 Hatching gland ENSDARG00000023656 (he1.1) protein_coding marker DOI:10.1093/g3journal/jkac062
    6 Hatching gland ENSDARG00000095072 (ctslb) protein_coding marker DOI:10.1093/g3journal/jkac062
    6 Hatching gland ENSDARG00000019122 (he1.2) protein_coding marker DOI:10.1093/g3journal/jkac062
    6 Hatching gland ENSDARG00000089750 (si:dkey-26g8.5) protein_coding marker DOI:10.1093/g3journal/jkac062
    6 Hatching gland ENSDARG00000094559 (zgc:174855) protein_coding marker DOI:10.1093/g3journal/jkac062
    7 Neuroblast ENSDARG00000058008 (six3a) protein_coding marker DOI:10.1093/g3journal/jkac062
    8 Neuron ENSDARG00000003469 (neurod4) protein_coding marker DOI:10.1093/g3journal/jkac062
    9 Neuron ENSDARG00000056092 (si:dkey-12h9.6) protein_coding marker DOI:10.1093/g3journal/jkac062
    10 Neuroblast ENSDARG00000076321 (col28a2a) protein_coding marker DOI:10.1093/g3journal/jkac062
    11 Somites ENSDARG00000103443 (vwde) protein_coding marker DOI:10.1093/g3journal/jkac062
    12 Epidermal cells ENSDARG00000102750 (cdh1) protein_coding marker DOI:10.1093/g3journal/jkac062
    13 Neuron ENSDARG00000018259 (atp1a3a) protein_coding marker DOI:10.1093/g3journal/jkac062
    14 Epidermal cells ENSDARG00000102750 (cdh1) protein_coding marker DOI:10.1093/g3journal/jkac062
    15 Skeletal muscle cells ENSDARG00000020574 (atp2a1) protein_coding marker DOI:10.1093/g3journal/jkac062
    16 Endothelium ENSDARG00000060263 (pecam1) protein_coding marker DOI:10.1093/g3journal/jkac062
    17 Neuron ENSDARG00000019566 (neurod1) protein_coding marker DOI:10.1093/g3journal/jkac062
    19 Skeletal muscle cells ENSDARG00000020574 (atp2a1) protein_coding marker DOI:10.1093/g3journal/jkac062
    20 Otic ENSDARG00000001870 (atp1a1a.4) protein_coding marker DOI:10.1093/g3journal/jkac062
    21 Hematopoietic cells ENSDARG00000045142 (hbae5) protein_coding marker DOI:10.1093/g3journal/jkac062
    22 Epidermal cells ENSDARG00000102750 (cdh1) protein_coding marker DOI:10.1093/g3journal/jkac062
    23 Floor plate ENSDARG00000031483 (col9a1b) protein_coding marker DOI:10.1093/g3journal/jkac062
    24 Mucous secreting cells ENSDARG00000037790 (pvalb8) protein_coding marker DOI:10.1093/g3journal/jkac062
    25 Hatching gland ENSDARG00000019122 (he1.2) protein_coding marker DOI:10.1093/g3journal/jkac062
    26 Erythroid cells ENSDARG00000045143 (hbbe2) protein_coding marker DOI:10.1093/g3journal/jkac062
    27 Integument Ionocyte ENSDARG00000076833 (atp1b1b) protein_coding marker DOI:10.1093/g3journal/jkac062
    28 Monocytes ENSDARG00000090873 (ccl34a.4) protein_coding marker DOI:10.1093/g3journal/jkac062
    29 Lens ENSDARG00000014803 (cryba1l2) protein_coding marker DOI:10.1093/g3journal/jkac062
    30 Heart primordium ENSDARG00000079564 (myh7) protein_coding marker DOI:10.1093/g3journal/jkac062

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)