DATASET ID: PRJNA672101 (nrl-KO)

Basic information

Tissue / Organ retina
Experiment type growth
Sample 5mpf, three retinas from nrl-KO zebrafsih
Source dataset ID SRR12899703
Project ID PRJNA672101
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Bipolar cells ENSDARG00000027236 (rs1a) protein_coding marker DOI:10.1371/journal.pgen.1009841
    2 Bipolar cells ENSDARG00000027236 (rs1a) protein_coding marker DOI:10.1371/journal.pgen.1009841
    2 Bipolar cells ENSDARG00000004358 (gnb3a) protein_coding marker DOI:10.1371/journal.pgen.1009841
    3 Cone ENSDARG00000042529 (gnat2) protein_coding marker DOI:10.1371/journal.pgen.1009841
    3 Cone ENSDARG00000030758 (guca1c) protein_coding marker DOI:10.1371/journal.pgen.1009841
    3 Cone ENSDARG00000070107 (six7) protein_coding marker DOI:10.1371/journal.pgen.1009841
    4 Bipolar cells ENSDARG00000002576 (cabp5a) protein_coding marker DOI:10.1371/journal.pgen.1009841
    5 Rod ENSDARG00000070666 (rhol) protein_coding marker DOI:10.1371/journal.pgen.1009841
    5 Rod ENSDARG00000002193 (rho) protein_coding marker DOI:10.1371/journal.pgen.1009841
    5 Rod ENSDARG00000044199 (gnat1) protein_coding marker DOI:10.1371/journal.pgen.1009841
    5 Rod ENSDARG00000038378 (sagb) protein_coding marker DOI:10.1371/journal.pgen.1009841
    5 Rod ENSDARG00000012125 (cnga1b) protein_coding marker DOI:10.1371/journal.pgen.1009841
    5 Rod ENSDARG00000029898 (cnga1a) protein_coding marker DOI:10.1371/journal.pgen.1009841
    5 Rod ENSDARG00000013393 (guca1b) protein_coding marker DOI:10.1371/journal.pgen.1009841
    5 Rod ENSDARG00000010454 (guca1a) protein_coding marker DOI:10.1371/journal.pgen.1009841
    6 Retinal ganglion cells ENSDARG00000025206 (syt2a) protein_coding marker DOI:10.1371/journal.pgen.1009841
    6 Retinal ganglion cells ENSDARG00000027828 (grin1a) protein_coding marker DOI:10.1371/journal.pgen.1009841
    6 Retinal ganglion cells ENSDARG00000014746 (rbfox1) protein_coding marker DOI:10.1371/journal.pgen.1009841
    10 RPE ENSDARG00000098724 (rgrb) protein_coding marker DOI:10.1371/journal.pgen.1009841
    10 RPE ENSDARG00000008306 (rdh5) protein_coding marker DOI:10.1371/journal.pgen.1009841
    10 RPE ENSDARG00000033760 (pmelb) protein_coding marker DOI:10.1371/journal.pgen.1009841
    10 RPE ENSDARG00000077652 (lratb.2) protein_coding marker DOI:10.1371/journal.pgen.1009841
    11 Horizontal cells ENSDARG00000014018 (lhx1a) protein_coding marker DOI:10.1371/journal.pgen.1009841
    11 Horizontal cells ENSDARG00000020771 (tnr) protein_coding marker DOI:10.1371/journal.pgen.1009841
    12 Microglia ENSDARG00000023188 (lcp1) protein_coding marker DOI:10.1371/journal.pgen.1009841
    12 Microglia ENSDARG00000033735 (ncf1) protein_coding marker DOI:10.1371/journal.pgen.1009841
    13 Muller glia cells ENSDARG00000012671 (inhbaa) protein_coding marker DOI:10.1371/journal.pgen.1009841
    18 Astrocyte ENSDARG00000057598 (s100b) protein_coding marker DOI:10.1371/journal.pgen.1009841
    18 Astrocyte ENSDARG00000040946 (olig2) protein_coding marker DOI:10.1371/journal.pgen.1009841
    18 Astrocyte ENSDARG00000006427 (fabp2) protein_coding marker DOI:10.1371/journal.pgen.1009841
    18 Astrocyte ENSDARG00000042357 (cldnk) protein_coding marker DOI:10.1371/journal.pgen.1009841

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)