Fish Single-cell RNA Database

GENE ID: ENSDARG00000027236

Symbol	Location	Gene type	Genome version	Species
rs1a	11: 30244356 ~ 30252098 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000027236 (rs1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000036043	znf408	7: 38744924 ~ 38750197 (+)
ENSDARG00000034424	atp1b2b	5: 38475531 ~ 38506981 (-)
ENSDARG00000044341	chst7	6: 37603968 ~ 37622576 (-)
ENSDARG00000010472	atp1a2a	2: 44203075 ~ 44255537 (-)
ENSDARG00000067950	zcchc2	2: 50062165 ~ 50099982 (+)
ENSDARG00000021739	klhl24a	2: 44571200 ~ 44604455 (+)
ENSDARG00000075116	sall2	2: 38147761 ~ 38157339 (+)
ENSDARG00000015790	atp1b3a	2: 16547706 ~ 16565690 (-)
ENSDARG00000062661	abca4b	2: 15203322 ~ 15294707 (+)
ENSDARG00000040432	klf2b	2: 55665095 ~ 55673225 (+)
ENSDARG00000002791	atp1a1a.1	1: 1712140 ~ 1793371 (+)
ENSDARG00000007739	atp1a1a.2	1: 1789357 ~ 1796832 (+)
ENSDARG00000039131	atp1a1a.3	1: 1805294 ~ 1815660 (+)
ENSDARG00000040252	atp1a1a.5	1: 1838164 ~ 1850104 (+)
ENSDARG00000001870	atp1a1a.4	1: 1689775 ~ 1706159 (+)
ENSDARG00000019856	atp1a1b	9: 35901554 ~ 35922201 (+)
ENSDARG00000075012	glra2	9: 54891962 ~ 54940881 (+)
ENSDARG00000117097	crygm2c	9: 22022105 ~ 22023061 (-)
ENSDARG00000104139	atp1a3b	16: 10776688 ~ 10820909 (+)
ENSDARG00000098164	aipl2	14: 40874608 ~ 40903014 (+)
ENSDARG00000018259	atp1a3a	19: 6328234 ~ 6385594 (-)
ENSDARG00000010610	sarm1	15: 28188362 ~ 28200049 (-)
ENSDARG00000042837	atp1b3b	15: 4353161 ~ 4415917 (-)
ENSDARG00000075067	aipl1	15: 24873388 ~ 24884784 (-)
ENSDARG00000099203	atp1b2a	23: 44732863 ~ 44763861 (+)
ENSDARG00000089063	lactbl1a	23: 21964325 ~ 21974831 (+)
ENSDARG00000077852	samd11	23: 23020709 ~ 23123901 (+)
ENSDARG00000087844	plekhn1	23: 23232136 ~ 23252668 (+)
ENSDARG00000070467	lactbl1b	11: 28127199 ~ 28157129 (-)
ENSDARG00000058448	zrsr2	11: 12732247 ~ 12744082 (-)
ENSDARG00000058504	ap1s2	11: 12719944 ~ 12728353 (+)
ENSDARG00000027236	rs1a	11: 30244356 ~ 30252098 (+)
ENSDARG00000020191	ppef1	11: 30253968 ~ 30280958 (+)
ENSDARG00000008275	klhl24b	24: 25760986 ~ 25788841 (-)
ENSDARG00000045904	nr2e3	25: 22274642 ~ 22278655 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	Bipolar cells (cluster: 1) Bipolar cells (cluster: 2)	marker marker	DOI:10.1371/journal.pgen.1009841 DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	Bipolar cells (cluster: 1)	marker	DOI:10.1371/journal.pgen.1009841
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	Retina (cluster: 10)	potential marker	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Neuron (cluster: 11) Photoreceptor cells (cluster: 16) Neuron (cluster: 7)	potential marker potential marker potential marker	NA NA NA
GSE158142 (2dpf)	head	baseline	2dpf, untreatment	Retina (cluster: 9)	potential marker	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Retina (cluster: 11)	potential marker	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Bipolar cells (cluster: 5)	potential marker	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	Photoreceptor cells (cluster: 3) Photoreceptor cells (cluster: 8)	potential marker potential marker	NA NA
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment	Photoreceptor cells (cluster: 5)	potential marker	NA
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment	Photoreceptor cells (cluster: 11) Photoreceptor cells (cluster: 7) Photoreceptor cells (cluster: 11) Photoreceptor cells (cluster: 7)	potential marker potential marker potential marker potential marker	NA NA NA NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000027236

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences