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| Tissue / Organ | head |
| Experiment type | baseline |
| Sample | 12hpf, 6 somites, untreatment |
| Source dataset ID | GSM4793185
|
| Project ID | GSE158142 |
| Species | Danio rerio |
| Cluster | Cell type | Gene id (symbol) | Gene type | Marker class | Evidence |
|---|---|---|---|---|---|
| 1 | Hindbrain rhombomere | ENSDARG00000023031 (hoxa2b) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 1 | Hindbrain rhombomere | -- (cyp26c1.1) | -- | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 1 | Hindbrain rhombomere | ENSDARG00000101076 (irx3a) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 2 | Midbrain | -- (eng2a) | -- | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 2 | Midbrain | ENSDARG00000008796 (her5) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 2 | Midbrain | ENSDARG00000002707 (her11) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 2 | Midbrain | -- (eng2b) | -- | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 2 | Midbrain | ENSDARG00000062478 (ackr3a) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 2 | Midbrain | ENSDARG00000006911 (wnt8b) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 2 | Midbrain | ENSDARG00000068213 (fzd10) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 2 | Midbrain | ENSDARG00000076571 (sp5a) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 3 | Optic vesicle | ENSDARG00000040321 (rx2) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 3 | Optic vesicle | ENSDARG00000000588 (grasp) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 3 | Optic vesicle | ENSDARG00000007941 (hmx4) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 3 | Optic vesicle | ENSDARG00000056979 (lhx9) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 4 | Diencephalon | ENSDARG00000057936 (lhx5) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 4 | Diencephalon | ENSDARG00000104107 (nkx2.4b) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 4 | Diencephalon | ENSDARG00000038867 (shhb) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 6 | Placode | ENSDARG00000019516 (sp7) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 6 | Placode | ENSDARG00000044356 (tp63) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 6 | Placode | ENSDARG00000004539 (ptgs2a) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 6 | Placode | ENSDARG00000111106 (arl3l1) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 7 | Mesoderm | ENSDARG00000040815 (tsku) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 7 | Mesoderm | ENSDARG00000055398 (foxc1b) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 7 | Mesoderm | ENSDARG00000012060 (thbs3b) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 7 | Mesoderm | ENSDARG00000056913 (pcolcea) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 8 | Heart primordium | ENSDARG00000037995 (gdf3) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 8 | Heart primordium | ENSDARG00000055630 (foxh1) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 9 | Neural crest | ENSDARG00000062262 (ednrab) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 9 | Neural crest | ENSDARG00000021032 (foxd3) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 10 | Epidermal cells | ENSDARG00000054616 (cldni) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 10 | Epidermal cells | ENSDARG00000012016 (hpgd) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 10 | Epidermal cells | ENSDARG00000088717 (ecrg4b) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 10 | Epidermal cells | ENSDARG00000103590 (cyp2aa6) | unprocessed_pseudogene | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 10 | Epidermal cells | ENSDARG00000079964 (dlx2a) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 10 | Epidermal cells | ENSDARG00000094752 (rpe65b) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 10 | Epidermal cells | ENSDARG00000045887 (mmp30) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 11 | Placode | -- (ptchd3) | -- | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 11 | Placode | ENSDARG00000015879 (pax8) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 11 | Placode | ENSDARG00000019516 (sp7) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 12 | Telencephalon | ENSDARG00000070769 (foxg1a) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 12 | Telencephalon | ENSDARG00000022531 (ntn1b) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 13 | Neuron | ENSDARG00000003469 (neurod4) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 13 | Neuron | ENSDARG00000056175 (scrt2) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 13 | Neuron | ENSDARG00000086327 (srrm4) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 14 | Prechordal plate,polsterq | -- (ctslb.1) | -- | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 14 | Prechordal plate,polsterq | -- (he1b) | -- | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 15 | Notochord | ENSDARG00000078052 (emilin3a) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 15 | Notochord | ENSDARG00000076904 (loxl5b) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 15 | Notochord | -- (hfe2) | -- | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 16 | Adaxial cells | ENSDARG00000006526 (fn1b) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 16 | Adaxial cells | ENSDARG00000007277 (myf5) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 16 | Adaxial cells | ENSDARG00000028213 (ttn.2) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 16 | Adaxial cells | ENSDARG00000000563 (ttn.1) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 16 | Adaxial cells | ENSDARG00000035958 (tnni2b.1) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 16 | Adaxial cells | ENSDARG00000030110 (myod1) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 16 | Adaxial cells | ENSDARG00000099197 (actc1b) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 17 | Periderm cells | ENSDARG00000055046 (ponzr5) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 17 | Periderm cells | ENSDARG00000055514 (icn2) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 17 | Periderm cells | ENSDARG00000100185 (elovl7b) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
| 17 | Periderm cells | ENSDARG00000103917 (znf185) | protein_coding | marker | DOI:10.1016/j.neuron.2020.09.023 |
