DATASET ID: GSE158142 (16hpf)

Basic information

Tissue / Organ head
Experiment type baseline
Sample 16hpf, 14 somites, untreatment
Source dataset ID GSM4793189
Project ID GSE158142
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Hindbrain rhombomere ENSDARG00000038205 (her2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    1 Hindbrain rhombomere ENSDARG00000056732 (her4.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Hindbrain ENSDARG00000025301 (gfap) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Diencephalon ENSDARG00000008131 (sox1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Diencephalon ENSDARG00000017107 (nr2e1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Optic vesicle ENSDARG00000071684 (rx1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Optic vesicle ENSDARG00000005574 (vsx2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Optic vesicle ENSDARG00000040321 (rx2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Placode ENSDARG00000026473 (six1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Midbrain -- (eng2b) -- marker DOI:10.1016/j.neuron.2020.09.023
    7 Neural crest ENSDARG00000062262 (ednrab) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Neural crest -- (fam212aa) -- marker DOI:10.1016/j.neuron.2020.09.023
    8 Mesoderm ENSDARG00000061140 (colec12) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Mesoderm ENSDARG00000091481 (foxc1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neuron ENSDARG00000014420 (elavl3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neuron ENSDARG00000004232 (dlb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neuron ENSDARG00000104945 (sncb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neuron ENSDARG00000033655 (stmn1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neuron ENSDARG00000042525 (ebf2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neuron ENSDARG00000071026 (mllt11) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Pharyngeal endoderm ENSDARG00000104495 (pltp) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Pharyngeal endoderm ENSDARG00000079305 (hbae3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Pharyngeal endoderm ENSDARG00000052556 (fgfrl1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Pectoral fin ENSDARG00000035095 (tdgf1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Pectoral fin ENSDARG00000079578 (rbpms2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Epidermal cells ENSDARG00000033466 (tagln2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Epidermal cells ENSDARG00000116617 (spaca4l) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Epidermal cells ENSDARG00000035018 (thy1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Placode ENSDARG00000069888 (cldna) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Placode ENSDARG00000056247 (bricd5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Placode ENSDARG00000040306 (otomp) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Periderm cells ENSDARG00000060682 (agr1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Periderm cells ENSDARG00000055514 (icn2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Periderm cells ENSDARG00000100095 (anxa1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Periderm cells ENSDARG00000096359 (eppk1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Periderm cells ENSDARG00000043128 (cldne) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Periderm cells ENSDARG00000012341 (capn9) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Prechordal plate,polster ENSDARG00000086189 (mgp) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Prechordal plate,polster ENSDARG00000038792 (klf17) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Blood precursors ENSDARG00000000767 (spi1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Blood precursors ENSDARG00000114451 (mmp13a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Blood precursors ENSDARG00000013539 (ikzf1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Blood precursors ENSDARG00000033735 (ncf1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Floor plate ENSDARG00000024492 (col9a2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Floor plate ENSDARG00000067831 (tbata) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Floor plate ENSDARG00000023694 (spon1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Rostral blood island (myeloid) ENSDARG00000030125 (sox7) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Rostral blood island (myeloid) ENSDARG00000103533 (clec14a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Rostral blood island (myeloid) ENSDARG00000040080 (fli1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)