DATASET ID: GSE158142 (2dpf)

Basic information

Tissue / Organ head
Experiment type baseline
Sample 2dpf, untreatment
Source dataset ID GSM4793201
Project ID GSE158142
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    2 Pharyngeal arch ENSDARG00000105223 (pmp22a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Pharyngeal arch ENSDARG00000059367 (mfap2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Neuron ENSDARG00000033234 (stmn2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Neuron ENSDARG00000021143 (rtn1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Neuron ENSDARG00000020609 (snap25a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Neuron ENSDARG00000038574 (scg2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Neuron ENSDARG00000071658 (ywhag2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Neuron ENSDARG00000051875 (islr2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Neuron ENSDARG00000104945 (sncb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Epidermal cells ENSDARG00000044356 (tp63) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Epidermal cells ENSDARG00000054616 (cldni) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Epidermal cells ENSDARG00000003808 (aqp3a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Epidermal cells ENSDARG00000044001 (lgals3b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Epidermal cells ENSDARG00000012972 (cfl1l) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Epidermal cells ENSDARG00000076321 (col28a2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Chondrocytes ENSDARG00000038056 (fgfbp2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Chondrocytes ENSDARG00000037845 (col9a3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Retina neuroblasts ENSDARG00000068168 (hes2.2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Retina ENSDARG00000010680 (gngt2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Retina ENSDARG00000069615 (ckmt2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Retina ENSDARG00000027495 (elovl4b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Retina ENSDARG00000043483 (otx5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Retina ENSDARG00000019902 (rcvrn2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Retina ENSDARG00000045904 (nr2e3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Retina ENSDARG00000102430 (opn6a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000030110 (myod1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000028213 (ttn.2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000009438 (myog) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000036371 (acta1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000058656 (desma) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Muscle cells ENSDARG00000058996 (jam2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Pigment cells ENSDARG00000056028 (slc22a7a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Erythroid cells ENSDARG00000012881 (slc4a1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Erythroid cells ENSDARG00000011166 (cahz) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Erythroid cells ENSDARG00000038147 (hbbe3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Erythroid cells ENSDARG00000045143 (hbbe2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Rostral blood island (myeloid) -- (vsg1) -- marker DOI:10.1016/j.neuron.2020.09.023
    15 Eye -- (lye) -- marker DOI:10.1016/j.neuron.2020.09.023
    15 Eye ENSDARG00000043128 (cldne) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Eye ENSDARG00000028098 (fut9d) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Eye ENSDARG00000100095 (anxa1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)