DATASET ID: GSE158142 (3dpf)

Basic information

Tissue / Organ head
Experiment type baseline
Sample 3dpf, untreatment
Source dataset ID GSM4793207
Project ID GSE158142
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Neuron ENSDARG00000104945 (sncb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    1 Neuron ENSDARG00000006497 (rtn1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    1 Neuron ENSDARG00000004621 (gpm6ab) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Pectoral fin ENSDARG00000105223 (pmp22a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Neuron ENSDARG00000010791 (dla) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Epidermal cells ENSDARG00000056938 (kera) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Epidermal cells ENSDARG00000088717 (ecrg4b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Epidermal cells ENSDARG00000104992 (epgn) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Epidermal cells ENSDARG00000044356 (tp63) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Chondrocytes -- (lect1) -- marker DOI:10.1016/j.neuron.2020.09.023
    7 Pigment cell (neural crest derived) ENSDARG00000056028 (slc22a7a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Pigment cell (neural crest derived) ENSDARG00000103789 (tmem130) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Pigment cell (neural crest derived) ENSDARG00000025912 (bscl2l) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Pigment cell (neural crest derived) ENSDARG00000071475 (aox5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Pigment cell (neural crest derived) ENSDARG00000099101 (gch2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Pigment cell (neural crest derived) ENSDARG00000045601 (cax1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Glia ENSDARG00000056934 (hepacama) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Glia ENSDARG00000019856 (atp1a1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Glia ENSDARG00000102453 (slc1a2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Periderm cells ENSDARG00000028098 (fut9d) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Periderm cells ENSDARG00000060682 (agr1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Periderm cells ENSDARG00000041051 (mid1ip1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Neutrophils -- (cd53) -- marker DOI:10.1016/j.neuron.2020.09.023
    10 Neutrophils ENSDARG00000026350 (wasb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Neutrophils ENSDARG00000017653 (rgs13) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Retina ENSDARG00000009637 (rcvrn3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Retina ENSDARG00000075295 (tulp1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Retina ENSDARG00000007788 (atp2b1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Retina -- (tmx3) -- marker DOI:10.1016/j.neuron.2020.09.023
    11 Retina ENSDARG00000052575 (arl13a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Erythroid cells ENSDARG00000115405 (hbbe1.2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Erythroid cells ENSDARG00000045143 (hbbe2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Erythroid cells ENSDARG00000011166 (cahz) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Erythroid cells ENSDARG00000113599 (hbbe1.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Cranial ganglion (vagal) -- (tusc5b) -- marker DOI:10.1016/j.neuron.2020.09.023
    13 Cranial ganglion (vagal) ENSDARG00000028306 (prph) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Otic vesicle ENSDARG00000040306 (otomp) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Otic vesicle ENSDARG00000001870 (atp1a1a.4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Otic vesicle ENSDARG00000056247 (bricd5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Rostral blood island (myeloid) ENSDARG00000056125 (myct1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Rostral blood island (myeloid) ENSDARG00000087457 (ecscr) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Rostral blood island (myeloid) ENSDARG00000053868 (etv2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Rostral blood island (myeloid) ENSDARG00000102100 (mrc1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Rostral blood island (myeloid) ENSDARG00000103533 (clec14a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Muscle cells ENSDARG00000036371 (acta1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Muscle cells ENSDARG00000058656 (desma) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Muscle cells ENSDARG00000009021 (chrna1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Muscle cells ENSDARG00000009438 (myog) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Otic vesicle ENSDARG00000033104 (tmc2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Otic vesicle ENSDARG00000020581 (otofb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Otic vesicle ENSDARG00000075800 (calml4a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Otic vesicle ENSDARG00000053074 (gipc3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Otic vesicle ENSDARG00000009727 (twf2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Pigment cells ENSDARG00000060345 (apoda.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Pigment cells ENSDARG00000091792 (akap12a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Pigment cells ENSDARG00000062003 (myo5b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    18 Pigment cells ENSDARG00000088390 (nme4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    19 Lens ENSDARG00000068974 (lim2.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)