DATASET ID: PRJNA754013 (Pachon cave)

Basic information

Tissue / Organ hypothalamus
Experiment type baseline
Sample male, female, adult, untreatment
Source dataset ID SRR15422680, SRR15422698
Project ID PRJNA754013
Species Astyanax mexicanus

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    2 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    3 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    4 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    5 Progenitors f3 (f3) protein_coding marker DOI:10.1038/s41559-021-01580-3
    5 Progenitors ptn (ptn) protein_coding marker DOI:10.1038/s41559-021-01580-3
    5 Progenitors slc1a2 (slc1a2) protein_coding marker DOI:10.1038/s41559-021-01580-3
    5 Progenitors cebpd (cebpd) protein_coding marker DOI:10.1038/s41559-021-01580-3
    6 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    7 Microglia apoc1 (apoc1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    8 Oligodendrocytes cldn19 (cldn19) protein_coding marker DOI:10.1038/s41559-021-01580-3
    8 Oligodendrocytes cda (cda) protein_coding marker DOI:10.1038/s41559-021-01580-3
    9 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    10 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    11 Leukocytes cxcr4 (cxcr4) protein_coding marker DOI:10.1038/s41559-021-01580-3
    11 Leukocytes rps12 (rps12) protein_coding marker DOI:10.1038/s41559-021-01580-3
    12 Macrophages cxcr4 (cxcr4) protein_coding marker DOI:10.1038/s41559-021-01580-3
    12 Macrophages ncf2 (ncf2) protein_coding marker DOI:10.1038/s41559-021-01580-3
    13 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    14 Ciliated pde6d (pde6d) protein_coding marker DOI:10.1038/s41559-021-01580-3
    14 Ciliated insm1 (insm1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    14 Ciliated vim (vim) protein_coding marker DOI:10.1038/s41559-021-01580-3
    14 Ciliated pde9a (pde9a) protein_coding marker DOI:10.1038/s41559-021-01580-3
    15 Progenitors f3 (f3) protein_coding marker DOI:10.1038/s41559-021-01580-3
    15 Progenitors ptn (ptn) protein_coding marker DOI:10.1038/s41559-021-01580-3
    15 Progenitors slc1a2 (slc1a2) protein_coding marker DOI:10.1038/s41559-021-01580-3
    15 Progenitors cebpd (cebpd) protein_coding marker DOI:10.1038/s41559-021-01580-3
    16 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    17 Lymphocyte cells tfpi2 (tfpi2) protein_coding marker DOI:10.1038/s41559-021-01580-3
    18 Oligodendrocyte precursor cells timp4 (timp4) protein_coding marker DOI:10.1038/s41559-021-01580-3
    19 Ependymal krt18 (krt18) protein_coding marker DOI:10.1038/s41559-021-01580-3
    20 Erythroid cells gpx1 (gpx1) protein_coding marker DOI:10.1038/s41559-021-01580-3

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)