Fish Single-cell RNA Database

GENE ID: ENSDARG00000077570

Symbol	Location	Gene type	Genome version	Species
cdh16	7: 44857271 ~ 44957503 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000077570 (cdh16), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000087867	NA	4: 75200467 ~ 75270523 (+)
ENSDARG00000055253	slc12a10.3	7: 4384863 ~ 4420201 (+)
ENSDARG00000055313	slc12a10.1	7: 4425348 ~ 4461104 (-)
ENSDARG00000077570	cdh16	7: 44857271 ~ 44957503 (-)
ENSDARG00000052271	slc22a18	7: 39537790 ~ 39552314 (-)
ENSDARG00000059805	slc25a38a	3: 4644031 ~ 4663602 (-)
ENSDARG00000038955	pimr68	2: 24352497 ~ 24355324 (+)
ENSDARG00000003779	ctnnd2b	2: 30554256 ~ 30693742 (-)
ENSDARG00000029718	p2rx3b	1: 44746154 ~ 44758388 (+)
ENSDARG00000077688	cpo	1: 5576151 ~ 5587575 (+)
ENSDARG00000069901	pimr152	13: 9162465 ~ 9165545 (+)
ENSDARG00000013855	slc12a3	18: 17583479 ~ 17598755 (+)
ENSDARG00000095386	pimr179	18: 44281623 ~ 44285539 (-)
ENSDARG00000002764	miox	18: 6732195 ~ 6742287 (-)
ENSDARG00000098096	slc12a1	18: 5273953 ~ 5300028 (+)
ENSDARG00000018162	ctnnal1	19: 34751687 ~ 34873566 (-)
ENSDARG00000007436	avpr2aa	23: 25038995 ~ 25050521 (-)
ENSDARG00000058332	krt18a.2	23: 10352921 ~ 10355552 (+)
ENSDARG00000069467	igsf9bb	21: 24703188 ~ 24865454 (-)
ENSDARG00000095098	pimr127	11: 38893819 ~ 38899816 (-)
ENSDARG00000095884	si:ch211-57m13.9	10: 6729670 ~ 6734797 (+)
ENSDARG00000044010	loxl2a	10: 20407888 ~ 20445549 (-)
ENSDARG00000062415	ctnnd2a	24: 22118804 ~ 22702017 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 10) Epidermal cells (cluster: 12)	marker marker	DOI:10.1182/bloodadvances.2020003969 DOI:10.1182/bloodadvances.2020003969
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	Epidermal cells (cluster: 16)	potential marker	NA
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 12)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 7)	potential marker	NA
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 11)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 4)	potential marker	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 10)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 8)	potential marker	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 13)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 12) Epidermal cells (cluster: 14)	potential marker potential marker	NA NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000077570

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences