Fish Single-cell RNA Database

GENE ID: ENSDARG00000089961

Symbol	Location	Gene type	Genome version	Species
si:cabz01007807.1	7: 2120630 ~ 2143313 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000089961 (si:cabz01007807.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045574	lrmp	4: 17252596 ~ 17278928 (-)
ENSDARG00000089961	si:cabz01007807.1	7: 2120630 ~ 2143313 (-)
ENSDARG00000044191	gxylt2	6: 44163727 ~ 44193740 (+)
ENSDARG00000004539	ptgs2a	2: 20916497 ~ 20923864 (-)
ENSDARG00000004880	acsm3	2: 44725550 ~ 44746723 (-)
ENSDARG00000011373	mknk2a	2: 23006792 ~ 23024952 (+)
ENSDARG00000103811	agla	2: 20472150 ~ 20526830 (+)
ENSDARG00000010276	ptgs2b	20: 34121818 ~ 34127415 (-)
ENSDARG00000015164	mknk2b	8: 20438884 ~ 20450375 (+)
ENSDARG00000088130	si:dkey-30c15.10	18: 7425222 ~ 7448047 (-)
ENSDARG00000093781	lrriq1	18: 16192083 ~ 16218370 (+)
ENSDARG00000068709	fam174b	18: 25003207 ~ 25009666 (+)
ENSDARG00000060917	anln	19: 35433155 ~ 35450857 (-)
ENSDARG00000007722	nudt8	15: 499848 ~ 506010 (-)
ENSDARG00000100352	aglb	24: 29783638 ~ 29868151 (-)
ENSDARG00000086805	itprid1	24: 32414643 ~ 32452355 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000089961

EXPRESSION

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