Fish Single-cell RNA Database

GENE ID: ENSDARG00000077167

Symbol	Location	Gene type	Genome version	Species
nmbb	7: 30085149 ~ 30087048 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000077167 (nmbb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000077167	nmbb	7: 30085149 ~ 30087048 (-)
ENSDARG00000067566	sftpbb	5: 68845048 ~ 68876211 (-)
ENSDARG00000076978	pmchl	5: 54685175 ~ 54685710 (+)
ENSDARG00000042845	oxt	5: 72087619 ~ 72093253 (+)
ENSDARG00000070932	hcrt	3: 17537352 ~ 17541448 (+)
ENSDARG00000040907	gcgb	9: 51265283 ~ 51271597 (+)
ENSDARG00000070810	ccka	16: 5774977 ~ 5779201 (+)
ENSDARG00000054152	nmbr	20: 37263663 ~ 37287107 (-)
ENSDARG00000056774	gpr37l1b	8: 21265263 ~ 21268303 (-)
ENSDARG00000006868	trh	8: 54220551 ~ 54223316 (-)
ENSDARG00000013968	psap	13: 5004924 ~ 5028964 (+)
ENSDARG00000057887	nts	18: 16330025 ~ 16339902 (+)
ENSDARG00000068144	nmba	18: 26784968 ~ 26785861 (-)
ENSDARG00000014490	tac1	19: 25649626 ~ 25653185 (+)
ENSDARG00000043074	grp	21: 10765886 ~ 10773344 (-)
ENSDARG00000045016	npffl	11: 276057 ~ 279328 (-)
ENSDARG00000056620	grpr	11: 29856032 ~ 29877090 (+)
ENSDARG00000006079	gpr37l1a	22: 696931 ~ 701105 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	NA	NA	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	NA	NA	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	NA	NA	NA
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment	NA	NA	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	NA	NA	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000077167

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences