Fish Single-cell RNA Database

GENE ID: ENSDARG00000094706

Symbol	Location	Gene type	Genome version	Species
cxcl11.6	5: 42076672 ~ 42077575 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000094706 (cxcl11.6), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000058389	ccl19a.1	5: 13353866 ~ 13392962 (+)
ENSDARG00000094706	cxcl11.6	5: 42076672 ~ 42077575 (-)
ENSDARG00000044561	ccr7	6: 10923105 ~ 10927766 (-)
ENSDARG00000058179	ackr3b	6: 15751982 ~ 15757867 (-)
ENSDARG00000055186	ccr9a	2: 32796873 ~ 32799083 (+)
ENSDARG00000090783	mfap4	1: 59090583 ~ 59092056 (+)
ENSDARG00000054975	cxcr2	9: 48108174 ~ 48109197 (+)
ENSDARG00000070755	ccr11.1	16: 7697878 ~ 7699207 (+)
ENSDARG00000041041	cxcr3.2	16: 11818126 ~ 11825303 (+)
ENSDARG00000070669	cxcr3.3	16: 11834516 ~ 11840134 (+)
ENSDARG00000007358	cxcr3.1	16: 11853212 ~ 11859309 (-)
ENSDARG00000086616	cabz01093075.1	16: 8716800 ~ 8725803 (+)
ENSDARG00000087474	ccr6a	20: 30610547 ~ 30614519 (+)
ENSDARG00000041919	ccl38.1	20: 39332579 ~ 39333799 (-)
ENSDARG00000041835	ccl38a.5	20: 38279523 ~ 38280392 (+)
ENSDARG00000041917	ccl38a.4	20: 38285671 ~ 38286553 (+)
ENSDARG00000037116	cxcl12a	13: 30804367 ~ 30819715 (+)
ENSDARG00000010514	cxcr5	18: 43891051 ~ 43894087 (+)
ENSDARG00000074772	ccl44	11: 6182680 ~ 6188413 (-)
ENSDARG00000076529	mn1a	10: 4095917 ~ 4112836 (+)
ENSDARG00000079713	ccl27b	10: 2669405 ~ 2671295 (+)
ENSDARG00000040643	ccr10	24: 36673686 ~ 36680261 (-)
ENSDARG00000094002	ccl34b.4	24: 27416592 ~ 27419198 (-)
ENSDARG00000093098	ccl34b.8	24: 27450085 ~ 27452488 (-)
ENSDARG00000071499	cxcl32b.1	24: 27511734 ~ 27512851 (+)
ENSDARG00000094511	ccl20b	24: 26006730 ~ 26009612 (+)
ENSDARG00000102945	ccl39.2	25: 13017489 ~ 13029702 (-)
ENSDARG00000096060	ccl39a.10	25: 25202213 ~ 25202523 (+)
ENSDARG00000102519	ccl33.2	25: 12849609 ~ 12851118 (+)
ENSDARG00000070378	ccl35.2	25: 25172983 ~ 25176139 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	Blood precursors (cluster: 16)	potential marker	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	Blood precursors (cluster: 20)	potential marker	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000094706

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences