Fish Single-cell RNA Database

GENE ID: ENSDARG00000006939

Symbol	Location	Gene type	Genome version	Species
tbx16l	5: 42280372 ~ 42297333 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000006939 (tbx16l), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000070546	msgn1	4: 306036 ~ 308006 (+)
ENSDARG00000070535	ripply2	4: 912563 ~ 914738 (+)
ENSDARG00000030347	mespba	7: 15308219 ~ 15316731 (+)
ENSDARG00000017078	mespaa	7: 15308042 ~ 15333427 (+)
ENSDARG00000101717	sox17	7: 58772209 ~ 58776400 (-)
ENSDARG00000014722	her1	5: 68788658 ~ 68795063 (-)
ENSDARG00000006939	tbx16l	5: 42280372 ~ 42297333 (+)
ENSDARG00000010192	pax3a	2: 47370323 ~ 47431205 (-)
ENSDARG00000069252	mixl1	20: 43715157 ~ 43723860 (-)
ENSDARG00000067544	tcf15	8: 28593707 ~ 28595491 (+)
ENSDARG00000036292	cdx4	14: 32961718 ~ 32965169 (-)
ENSDARG00000114554	cdx1a	14: 3287740 ~ 3312722 (+)
ENSDARG00000099761	vox	13: 50621840 ~ 50624743 (-)
ENSDARG00000007891	meox1	12: 27462225 ~ 27469267 (+)
ENSDARG00000007597	bloc1s4	19: 25679538 ~ 25693728 (-)
ENSDARG00000040955	dharma	15: 29011290 ~ 29012493 (-)
ENSDARG00000070348	hoxc10a	23: 35969228 ~ 36086895 (+)
ENSDARG00000054103	ripply1	21: 37966933 ~ 37973819 (-)
ENSDARG00000102389	ved	10: 44997062 ~ 45002196 (-)
ENSDARG00000068761	mespab	25: 11015417 ~ 11016675 (-)
ENSDARG00000097947	mespbb	25: 11025903 ~ 11026907 (-)
ENSDARG00000075977	prr5a	25: 21075227 ~ 21092222 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos	Erythroid cells (cluster: 1)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Hematopoietic cells (cluster: 21)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000006939

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences