Fish Single-cell RNA Database

GENE ID: ENSDARG00000068761

Symbol	Location	Gene type	Genome version	Species
mespab	25: 11015417 ~ 11016675 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000068761 (mespab), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000070535	ripply2	4: 912563 ~ 914738 (+)
ENSDARG00000014722	her1	5: 68788658 ~ 68795063 (-)
ENSDARG00000017917	her7	5: 68807170 ~ 68808485 (+)
ENSDARG00000006939	tbx16l	5: 42280372 ~ 42297333 (+)
ENSDARG00000037879	lfng	3: 41917499 ~ 41926869 (+)
ENSDARG00000102976	uncx	3: 43352556 ~ 43356082 (-)
ENSDARG00000019335	hes6	2: 48288461 ~ 48304696 (+)
ENSDARG00000011600	epha4b	2: 40294313 ~ 40514151 (+)
ENSDARG00000037760	uncx4.1	1: 9290103 ~ 9294115 (+)
ENSDARG00000007329	tbx16	8: 51733907 ~ 51753604 (-)
ENSDARG00000008796	her5	14: 30543008 ~ 30544666 (+)
ENSDARG00000011785	tbx6	12: 3912544 ~ 3923070 (+)
ENSDARG00000036930	tbx18	23: 31107685 ~ 31118371 (+)
ENSDARG00000054103	ripply1	21: 37966933 ~ 37973819 (-)
ENSDARG00000068761	mespab	25: 11015417 ~ 11016675 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	Non-axial mesoderm cells (cluster: 4)	marker	DOI:10.1038/s41467-021-23834-1
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	Ventral (cluster: 3)	potential marker	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000068761

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences