Fish Single-cell RNA Database

GENE ID: ENSDARG00000055172

Symbol	Location	Gene type	Genome version	Species
si:ch211-256m1.8	3: 25154078 ~ 25165189 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000055172 (si:ch211-256m1.8), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000053709	si:ch73-89b15.3	4: 2267641 ~ 2290268 (+)
ENSDARG00000077256	nat8l	7: 24457191 ~ 24472991 (-)
ENSDARG00000054786	faah2b	7: 24508123 ~ 24520866 (-)
ENSDARG00000093734	si:ch211-209a2.2	5: 61336781 ~ 61349059 (-)
ENSDARG00000005154	aspa	5: 62340799 ~ 62356975 (+)
ENSDARG00000060991	mief1	3: 25136153 ~ 25148047 (-)
ENSDARG00000055172	si:ch211-256m1.8	3: 25154078 ~ 25165189 (+)
ENSDARG00000038297	aspdh	3: 16747317 ~ 16760923 (-)
ENSDARG00000098825	farsa	3: 13879446 ~ 13901074 (+)
ENSDARG00000076970	si:ch211-165b10.3	2: 47623202 ~ 47634015 (+)
ENSDARG00000008457	faah2a	1: 40237276 ~ 40258430 (+)
ENSDARG00000093289	si:dkey-9i23.14	1: 44930457 ~ 44933094 (-)
ENSDARG00000037309	gatb	1: 24520503 ~ 24558838 (-)
ENSDARG00000000540	asdurf	9: 41079669 ~ 41090343 (-)
ENSDARG00000041895	cad	20: 38788319 ~ 38827623 (-)
ENSDARG00000055759	efhd2	8: 25818622 ~ 25846188 (-)
ENSDARG00000060494	eprs1	17: 39697621 ~ 39739994 (+)
ENSDARG00000001313	g2e3	17: 28798725 ~ 28811747 (-)
ENSDARG00000002219	si:dkey-103j14.5	13: 23233956 ~ 23270576 (-)
ENSDARG00000021681	asrgl1	13: 27768898 ~ 27782764 (+)
ENSDARG00000002071	adss2	13: 11489953 ~ 11536951 (-)
ENSDARG00000075132	fh	12: 47638430 ~ 47648538 (-)
ENSDARG00000016375	asns	19: 25656812 ~ 25678002 (-)
ENSDARG00000104170	si:dkey-208k4.2	19: 18310386 ~ 18313381 (-)
ENSDARG00000056804	si:dkey-40g16.6	15: 21694388 ~ 21702317 (-)
ENSDARG00000043446	efhd1	15: 40188076 ~ 40212204 (+)
ENSDARG00000069495	tmem179b	21: 25664393 ~ 25669820 (-)
ENSDARG00000012399	adssl	21: 26522571 ~ 26531535 (+)
ENSDARG00000007955	iars1	11: 1337620 ~ 1392468 (-)
--	adssl1	--
--	ass1	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Iridophore (cluster: 18)	marker	DOI:10.1093/g3journal/jkac062
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	Pigment cells (cluster: 19)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Pigment cells (cluster: 17)	potential marker	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	Pigment cells (cluster: 10)	potential marker	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	Neutrophils (cluster: 8)	potential marker	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Pigment cells (cluster: 18)	potential marker	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	Iridophore (cluster: 9)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000055172

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences