Fish Single-cell RNA Database

GENE ID: ENSDARG00000008835

Symbol	Location	Gene type	Genome version	Species
si:dkey-46g23.5	3: 3432960 ~ 3448095 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000008835 (si:dkey-46g23.5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000016538	zgc:55888	4: 9467049 ~ 9476418 (+)
ENSDARG00000023479	lrp13	5: 9179578 ~ 9216758 (-)
ENSDARG00000093384	si:ch211-150d5.3	3: 5297493 ~ 5311659 (+)
ENSDARG00000008835	si:dkey-46g23.5	3: 3432960 ~ 3448095 (-)
ENSDARG00000016908	zp3e	3: 31875772 ~ 31879201 (-)
ENSDARG00000004898	zp2l2	6: 9945303 ~ 9952103 (-)
ENSDARG00000096670	si:ch211-1f22.16	1: 57040472 ~ 57044846 (+)
ENSDARG00000062309	si:ch211-1f22.14	1: 57050899 ~ 57059786 (+)
ENSDARG00000096523	si:ch73-94k4.5	1: 57151926 ~ 57160654 (+)
ENSDARG00000096671	si:dkey-27j5.10	1: 57132140 ~ 57236167 (+)
ENSDARG00000086166	si:ch211-286b5.9	1: 55348537 ~ 55353978 (+)
ENSDARG00000101532	si:ch211-1f22.3	1: 56801021 ~ 56805426 (+)
ENSDARG00000043445	si:ch211-152f2.3	1: 56900580 ~ 56904810 (+)
ENSDARG00000094370	si:ch211-125e6.13	9: 33220342 ~ 33221670 (+)
ENSDARG00000055833	lectin	9: 33236844 ~ 33238249 (+)
ENSDARG00000041248	si:dkey-241l7.6	20: 54013212 ~ 54034543 (-)
ENSDARG00000088989	si:dkey-241l7.5	20: 54018005 ~ 54019284 (+)
ENSDARG00000086956	si:dkey-241l7.3	20: 54027778 ~ 54029122 (+)
ENSDARG00000089478	si:dkey-241l7.4	20: 54024559 ~ 54025947 (+)
ENSDARG00000086352	zp2.1	20: 54309148 ~ 54310985 (+)
ENSDARG00000086522	zp2.5	20: 54312970 ~ 54316972 (+)
ENSDARG00000095867	si:ch73-132k15.2	8: 50134007 ~ 50135528 (-)
ENSDARG00000090768	zp3.2	17: 2569521 ~ 2596125 (-)
ENSDARG00000092887	si:dkeyp-46h3.3	19: 27577099 ~ 27579835 (-)
ENSDARG00000077741	zgc:175135	11: 18037729 ~ 18039583 (+)
ENSDARG00000095281	zgc:152652	24: 9981933 ~ 9991286 (-)
ENSDARG00000088713	si:ch211-226h8.14	22: 25335320 ~ 25337183 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type	NA	NA	NA
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	NA	NA	NA
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC	NA	NA	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000008835

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences