Fish Single-cell RNA Database

GENE ID: ENSDARG00000039116

Symbol	Location	Gene type	Genome version	Species
nr5a5	3: 53457192 ~ 53465249 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000039116 (nr5a5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045527	nr2c1	4: 25838345 ~ 25859305 (-)
ENSDARG00000016363	her8a	7: 26429941 ~ 26436480 (-)
ENSDARG00000024877	ptgr1	7: 24375070 ~ 24390879 (-)
ENSDARG00000052695	nr2f1a	5: 49744713 ~ 49751549 (+)
ENSDARG00000039116	nr5a5	3: 53457192 ~ 53465249 (-)
ENSDARG00000003607	nr2f6a	2: 24374305 ~ 24386382 (+)
ENSDARG00000029766	nr1i2	9: 9502610 ~ 9562644 (+)
ENSDARG00000044685	nr0b2a	16: 54875530 ~ 54880550 (+)
ENSDARG00000017107	nr2e1	20: 32437396 ~ 32446406 (-)
ENSDARG00000037533	mep1b	20: 6493648 ~ 6516539 (+)
ENSDARG00000042477	nr2c2	8: 53120278 ~ 53142068 (+)
ENSDARG00000041848	rh50	8: 37259398 ~ 37263524 (-)
ENSDARG00000101508	nr6a1a	8: 52888295 ~ 53044300 (-)
ENSDARG00000055158	prox1a	17: 32822588 ~ 32865788 (-)
ENSDARG00000004861	esrrga	17: 29797876 ~ 29902187 (-)
ENSDARG00000023591	nrbf2b	12: 8569685 ~ 8579727 (+)
ENSDARG00000102756	nr0b2b	19: 14153486 ~ 14155781 (-)
ENSDARG00000099483	vdra	23: 45822935 ~ 45825632 (+)
ENSDARG00000056541	nr0b1	11: 29682909 ~ 29685853 (-)
ENSDARG00000002060	brf2	10: 41279007 ~ 41302909 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	Enterocytes (cluster: 2)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000039116

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences