Fish Single-cell RNA Database

GENE ID: ENSDARG00000056767

Symbol	Location	Gene type	Genome version	Species
itgb3a	3: 19621034 ~ 19649535 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000056767 (itgb3a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000017901	tln2a	7: 29863548 ~ 29946044 (+)
ENSDARG00000052061	col4a6	7: 50920437 ~ 51102479 (-)
ENSDARG00000052063	col4a5	7: 51103232 ~ 51194430 (+)
ENSDARG00000036086	itga11a	7: 33176517 ~ 33248773 (-)
ENSDARG00000021948	tnc	5: 28560847 ~ 28679135 (-)
ENSDARG00000093572	lamc3	5: 34407763 ~ 34542480 (+)
ENSDARG00000018687	itga2b	3: 21350509 ~ 21382491 (-)
ENSDARG00000037917	itga3a	3: 34846201 ~ 34917041 (+)
ENSDARG00000056767	itgb3a	3: 19621034 ~ 19649535 (+)
ENSDARG00000020771	tnr	2: 35240485 ~ 35474115 (+)
ENSDARG00000024829	tnn	2: 35509418 ~ 35567110 (-)
ENSDARG00000069946	itga6b	1: 31019165 ~ 31064706 (+)
ENSDARG00000019815	fn1a	9: 15362300 ~ 15424639 (-)
ENSDARG00000103056	itga4	9: 44034790 ~ 44088067 (+)
ENSDARG00000055009	col4a1	9: 8634229 ~ 8670158 (-)
ENSDARG00000104110	col4a2	9: 8761099 ~ 8882901 (+)
ENSDARG00000042282	itga6a	9: 3429662 ~ 3486488 (+)
ENSDARG00000006314	itgav	9: 11597500 ~ 11655031 (-)
ENSDARG00000002507	itga10	16: 14276364 ~ 14353567 (-)
ENSDARG00000078717	itga8	16: 28383758 ~ 28512860 (+)
ENSDARG00000004672	ptk2ab	16: 30735426 ~ 30870170 (-)
ENSDARG00000039577	ptk2bb	20: 19827379 ~ 19864131 (-)
ENSDARG00000020242	fermt2	17: 50701748 ~ 50787754 (+)
ENSDARG00000056018	itga6l	14: 41528635 ~ 41600040 (-)
ENSDARG00000032435	itga9	13: 47863695 ~ 48058813 (-)
ENSDARG00000077231	vwf	18: 7150144 ~ 7228004 (+)
ENSDARG00000012824	itga3b	12: 5587347 ~ 5663189 (-)
ENSDARG00000055388	vtna	15: 28202170 ~ 28208926 (+)
ENSDARG00000002831	col4a4	15: 35951888 ~ 36055401 (-)
ENSDARG00000008107	src	23: 39346774 ~ 39450700 (+)
ENSDARG00000074201	flna	23: 19759128 ~ 19809027 (+)
ENSDARG00000006353	itga5	23: 33447625 ~ 33558161 (-)
ENSDARG00000053831	vtnb	21: 39067512 ~ 39081107 (-)
ENSDARG00000074316	itga1	10: 8730988 ~ 8841038 (+)
ENSDARG00000062974	itga2.2	10: 8885769 ~ 8940896 (+)
ENSDARG00000100729	tln1	10: 6121558 ~ 6313905 (+)
ENSDARG00000101209	lamb1a	25: 31546828 ~ 31629095 (-)
ENSDARG00000007950	itga11b	25: 1343161 ~ 1426876 (-)
ENSDARG00000110973	tln2b	25: 33033633 ~ 33151690 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	Epidermal cells (cluster: 8)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Epidermal cells (cluster: 11)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Epidermal cells (cluster: 22)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Epidermal cells (cluster: 14) Epidermal cells (cluster: 29)	potential marker potential marker	NA NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000056767

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences