|
Dataset ID |
Tissue / Organ |
Experiment type |
Sample |
Cell type |
Marker class |
Evidence |
|
PRJNA415636 (brain) |
brain |
baseline |
adult, Zebrabow M, brain |
NA |
NA |
NA |
|
GSE144944 (fgfr3 -|-) |
cranial vault |
growth |
1mpf, fgfr3 -/- |
NA |
NA |
NA |
|
GSE144944 (fgfr3 +|+) |
cranial vault |
baseline |
1mpf, fgfr3 +/+ |
NA |
NA |
NA |
|
PRJNA564810 (2dpf) |
embryo |
baseline |
2dpf, a single-cell transcriptome atlas for zebrafish development |
NA |
NA |
NA |
|
PRJNA656271 (2dpf) |
embryo |
baseline |
2dpf, FACS-isolated EGFP+ cells |
NA |
NA |
NA |
|
PRJNA564810 (1dpf) |
embryo |
baseline |
1dpf, a single-cell transcriptome atlas for zebrafish development |
NA |
NA |
NA |
|
PRJNA656271 (24hpf) |
embryo |
baseline |
24hpf, FACS-isolated EGFP+ cells |
NA |
NA |
NA |
|
PRJNA564810 (5dpf) |
embryo |
baseline |
5dpf, a single-cell transcriptome atlas for zebrafish development |
NA |
NA |
NA |
|
GSE168695 (5dpf) |
embryo |
baseline |
5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
NA |
NA |
NA |
|
GSE158142 (3dpf) |
head |
baseline |
3dpf, untreatment |
NA |
NA |
NA |
|
PRJNA415636 (pancreas, liver) |
hepatopancreas |
baseline |
adult, Zebrabow M, pancreas and liver |
NA |
NA |
NA |
|
PRJNA754013 (zebrafish) |
hypothalamus |
baseline |
adult, male, female, untreatment |
NA |
NA |
NA |
|
GSE150498 (nod2-|-, 2X DSS+BZA) |
intestine |
disease |
6dpf, nod2-/-, 2X DSS+BZA |
NA |
NA |
NA |
|
GSE150498 (wildtype, untreated) |
intestine |
baseline |
6dpf, wildtype, untreated |
NA |
NA |
NA |
|
GSE150498 (nod2-|-, untreated) |
intestine |
disease |
6dpf, nod2-/-, untreated |
NA |
NA |
NA |
|
GSE150498 (nod2-|-, 1X DSS) |
intestine |
disease |
6dpf, nod2-/-, 1X DSS |
NA |
NA |
NA |
|
GSE137784 (HCC, CreLox) |
liver |
disease |
6mpf, male, isolated from the zebrafish without HCC |
NA |
NA |
NA |
|
GSE137784 (no HCC) |
liver |
baseline |
6mpf, male, isolated from the CreLox zebrafish with HCC |
NA |
NA |
NA |
|
GSE137784 (HCC, HepABC) |
liver |
disease |
6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC |
NA |
NA |
NA |
|
GSE123241 (wild type) |
neuromast |
baseline |
5dpf, wild type during sensory hair cell regeneration, lateral line sensory |
NA |
NA |
NA |
|
GSE123241 (fgf3 mutants) |
neuromast |
regeneration |
5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory |
NA |
NA |
NA |
|
PRJNA605021 (hair cells) |
neuromast |
baseline |
7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae |
NA |
NA |
NA |
|
GSE123241 (fgf3 siblings) |
neuromast |
regeneration |
5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory |
NA |
NA |
NA |
|
PRJNA668529 (control) |
olfactory rosette |
baseline |
3mpf, intranasal PBS |
NA |
NA |
NA |
|
PRJNA668529 (3d) |
olfactory rosette |
disease |
3mpf, intranasal 100ng r-Spike 3 days |
NA |
NA |
NA |
|
PRJNA668529 (3h) |
olfactory rosette |
disease |
3mpf, intranasal 100ng r-Spike 3 hours |
NA |
NA |
NA |
|
GSE148591 (3mpf) |
pituitary |
transplant |
3mpf, graft transplantation during early embryogenesis |
NA |
NA |
NA |
|
GSE148591 (6mpf) |
pituitary |
baseline |
6mpf, male, Sox17:CreERT2 |
NA |
NA |
NA |
|
PRJNA415636 (primary pancreatic islet) |
primary pancreatic islet |
baseline |
adult, Zebrabow M, primary pancreatic islet |
NA |
NA |
NA |
|
GSE122680 (14dpf) |
retina |
baseline |
14dpf, WT, untreatment |
NA |
NA |
NA |
|
PRJNA672101 (WT) |
retina |
baseline |
5mpf, three retinas from WT zebrafsih |
NA |
NA |
NA |
|
GSE131136 (all) |
trunk, skin |
baseline |
5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone |
NA |
NA |
NA |
|
GSE159709 (melanoma) |
tumor |
disease |
adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells |
NA |
NA |
NA |
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
16dpf, cd41:GFPlow-runx1-/- |
NA |
NA |
NA |
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
6dpf, cd41:GFPlow-runx1-/- |
NA |
NA |
NA |
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
16dpf, cd41:GFPlow-runx1-/- |
NA |
NA |
NA |
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
10dpf, cd41:GFPlow-runx1-/- |
NA |
NA |
NA |
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
2.5dpf, cd41:GFPlow-runx1-/- |
NA |
NA |
NA |
|
GSE158099 (WT) |
whole body |
baseline |
16dpf, cd41:GFPlow-WT |
NA |
NA |
NA |
|
GSE158099 (WT) |
whole body |
baseline |
6dpf, cd41:GFPlow-WT |
NA |
NA |
NA |