Fish Single-cell RNA Database

GENE ID: ENSDARG00000008772

Symbol	Location	Gene type	Genome version	Species
cacng1a	6: 21470261 ~ 21492752 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000008772 (cacng1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000014804	cacna2d1a	4: 19768679 ~ 19884440 (-)
ENSDARG00000026855	cacna2d4a	4: 20271463 ~ 20292853 (-)
ENSDARG00000043010	camk2d1	7: 57725708 ~ 57880131 (+)
ENSDARG00000099045	cacnb2a	7: 71792290 ~ 71837265 (-)
ENSDARG00000067997	myhz1.3	5: 32262499 ~ 32274383 (-)
ENSDARG00000021735	cacna1ba	5: 29296396 ~ 29488245 (-)
ENSDARG00000070522	cacna1ia	3: 29082267 ~ 29378430 (+)
ENSDARG00000002167	cacnb1	3: 16157120 ~ 16227683 (-)
ENSDARG00000076401	cacng3b	3: 35298078 ~ 35375978 (+)
ENSDARG00000037905	cacna1aa	3: 33773156 ~ 33901483 (-)
ENSDARG00000039240	cacng5b	3: 56366395 ~ 56394018 (+)
ENSDARG00000059914	sdr42e2	3: 58379450 ~ 58416968 (+)
ENSDARG00000074669	cacng4b	3: 61078057 ~ 61099004 (-)
ENSDARG00000028027	trim63a	6: 15651977 ~ 15653494 (-)
ENSDARG00000008772	cacng1a	6: 21470261 ~ 21492752 (-)
ENSDARG00000003326	cacng5a	6: 21395051 ~ 21455822 (+)
ENSDARG00000115540	cacng4a	6: 21513363 ~ 21521755 (-)
ENSDARG00000055565	cacnb2b	2: 31475772 ~ 31519662 (+)
ENSDARG00000099708	cacna1hb	1: 8304904 ~ 8404005 (+)
ENSDARG00000058460	cacng3a	1: 9082417 ~ 9091935 (+)
ENSDARG00000014196	myl1	9: 38994232 ~ 39005317 (-)
ENSDARG00000070626	cacng8b	16: 12882381 ~ 12953739 (-)
ENSDARG00000070624	cacng7b	16: 12963020 ~ 13004166 (-)
ENSDARG00000057317	nexn	8: 18515711 ~ 18537882 (-)
ENSDARG00000010933	cacna1fa	8: 44850710 ~ 44868020 (-)
ENSDARG00000023683	cacna1fb	8: 22851472 ~ 22927224 (+)
ENSDARG00000041616	b3gnt9	18: 17511995 ~ 17513426 (-)
ENSDARG00000073752	NA	18: 9749375 ~ 9948604 (+)
ENSDARG00000020450	cacng8a	19: 9813287 ~ 9829965 (-)
ENSDARG00000063006	cacng7a	19: 9840771 ~ 9882821 (-)
ENSDARG00000006923	cacna1ab	11: 30817943 ~ 31026335 (+)
ENSDARG00000024047	tmem38a	11: 7158723 ~ 7179516 (+)
ENSDARG00000023886	cacna2d4b	25: 19023737 ~ 19090628 (-)
--	cacna2d2	--
--	cacna2d3a	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	Skeletal muscle cells (cluster: 12)	potential marker	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 12)	potential marker	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 17)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 15) Skeletal muscle cells (cluster: 19)	potential marker potential marker	NA NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Muscle cells (cluster: 16)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000008772

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences