Fish Single-cell RNA Database

GENE ID: ENSDARG00000099708

Symbol	Location	Gene type	Genome version	Species
cacna1hb	1: 8304904 ~ 8404005 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000099708 (cacna1hb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000076401	cacng3b	3: 35298078 ~ 35375978 (+)
ENSDARG00000039240	cacng5b	3: 56366395 ~ 56394018 (+)
ENSDARG00000052360	cacng1b	3: 61043774 ~ 61065055 (-)
ENSDARG00000074669	cacng4b	3: 61078057 ~ 61099004 (-)
ENSDARG00000024141	cav3	6: 41996066 ~ 42003780 (-)
ENSDARG00000008772	cacng1a	6: 21470261 ~ 21492752 (-)
ENSDARG00000003326	cacng5a	6: 21395051 ~ 21455822 (+)
ENSDARG00000115540	cacng4a	6: 21513363 ~ 21521755 (-)
ENSDARG00000099708	cacna1hb	1: 8304904 ~ 8404005 (+)
ENSDARG00000058460	cacng3a	1: 9082417 ~ 9091935 (+)
ENSDARG00000070626	cacng8b	16: 12882381 ~ 12953739 (-)
ENSDARG00000070624	cacng7b	16: 12963020 ~ 13004166 (-)
ENSDARG00000014517	usp5	16: 11965371 ~ 11986321 (-)
ENSDARG00000060259	zgc:162160	16: 42193163 ~ 42238120 (-)
ENSDARG00000031540	tmem200a	20: 2227860 ~ 2241954 (+)
ENSDARG00000034229	kcnip3a	8: 42764234 ~ 42907824 (+)
ENSDARG00000020450	cacng8a	19: 9813287 ~ 9829965 (-)
ENSDARG00000063006	cacng7a	19: 9840771 ~ 9882821 (-)
ENSDARG00000060439	clcn2c	15: 46736794 ~ 46779934 (-)
ENSDARG00000071570	si:dkeyp-87e7.4	22: 10232527 ~ 10262441 (+)
ENSDARG00000104550	clcn2b	KN150171.1: 22085 ~ 130516 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000099708

EXPRESSION

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