Fish Single-cell RNA Database

GENE ID: ENSDARG00000092671

Symbol	Location	Gene type	Genome version	Species
pard3ba	1: 5798548 ~ 6028876 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000092671 (pard3ba), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045485	rassf8b	4: 20507105 ~ 20521441 (-)
ENSDARG00000077013	znf280d	7: 52712807 ~ 52751563 (+)
ENSDARG00000009693	llgl1	3: 39970355 ~ 40054749 (-)
ENSDARG00000074599	frmd4ba	6: 43220191 ~ 43387920 (-)
ENSDARG00000021225	prkci	2: 37365551 ~ 37401600 (-)
ENSDARG00000017311	gpsm2	2: 45491032 ~ 45510704 (-)
ENSDARG00000008706	paip2b	1: 41465771 ~ 41472087 (+)
ENSDARG00000074381	farp1	1: 2301958 ~ 2444210 (+)
ENSDARG00000092671	pard3ba	1: 5798548 ~ 6028876 (-)
ENSDARG00000032197	klf12b	9: 30720048 ~ 30783892 (+)
ENSDARG00000006065	znf385b	9: 43243212 ~ 43538328 (-)
ENSDARG00000063311	soga3a	16: 5184402 ~ 5199333 (+)
ENSDARG00000031876	pard6ga	16: 25388503 ~ 25393699 (-)
ENSDARG00000090577	rassf11	8: 22516728 ~ 22520784 (+)
ENSDARG00000006272	mpp5a	17: 34186632 ~ 34239514 (+)
ENSDARG00000028321	synj2bp	13: 36557205 ~ 36566260 (-)
ENSDARG00000069378	pard6a	18: 22028674 ~ 22094102 (-)
ENSDARG00000042249	NA	18: 8503370 ~ 8579907 (-)
ENSDARG00000023920	llgl2	12: 33734849 ~ 33789218 (-)
ENSDARG00000036090	pard6gb	19: 25699329 ~ 25772980 (-)
ENSDARG00000101949	numbl	15: 14436159 ~ 14552101 (-)
ENSDARG00000075455	soga3b	23: 40452157 ~ 40466398 (+)
ENSDARG00000076496	frmd4bb	23: 799100 ~ 838344 (+)
ENSDARG00000003865	pard6b	23: 19066696 ~ 19103855 (-)
ENSDARG00000102026	gpsm2l	23: 40133136 ~ 40186528 (+)
ENSDARG00000061638	dcakd	24: 36798558 ~ 36802891 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NaR ionocytes (cluster: 11)	potential marker	NA
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment	Retinal ganglion cells (cluster: 8)	potential marker	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000092671

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences