Fish Single-cell RNA Database

GENE ID: ENSDARG00000036833

Symbol	Location	Gene type	Genome version	Species
upp2	9: 16097812 ~ 16109001 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000036833 (upp2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000078619	pnp5a	7: 6652967 ~ 6668424 (+)
ENSDARG00000036426	zgc:103586	7: 20518218 ~ 20521608 (+)
ENSDARG00000051889	dhodh	7: 56517402 ~ 56529522 (+)
ENSDARG00000046127	tk2	7: 44599313 ~ 44605056 (-)
ENSDARG00000077590	arsj	7: 57677120 ~ 57691446 (+)
ENSDARG00000035549	uprt	5: 23107804 ~ 23118290 (-)
ENSDARG00000022213	uck2b	2: 6051916 ~ 6065416 (-)
ENSDARG00000010267	dpydb	2: 19824190 ~ 20120904 (-)
ENSDARG00000099802	pnp5b	2: 58186846 ~ 58201173 (-)
ENSDARG00000036650	cdadc1	1: 46617006 ~ 46632966 (-)
ENSDARG00000036833	upp2	9: 16097812 ~ 16109001 (-)
ENSDARG00000017466	ncam2	9: 35170335 ~ 35557397 (-)
ENSDARG00000012215	umps	9: 11576502 ~ 11587070 (-)
ENSDARG00000015734	aicda	16: 12660477 ~ 12665652 (+)
ENSDARG00000029230	pnp4b	16: 36807924 ~ 36834633 (-)
ENSDARG00000071017	nt5e	20: 826459 ~ 848068 (+)
ENSDARG00000033916	si:ch211-243j20.2	20: 38620666 ~ 38670696 (+)
ENSDARG00000034957	hddc2	20: 39685572 ~ 39689791 (+)
ENSDARG00000006074	uck2a	8: 21114338 ~ 21133119 (+)
ENSDARG00000001686	uckl1a	8: 23009662 ~ 23028536 (+)
ENSDARG00000071562	mtus1a	14: 30285613 ~ 30357641 (+)
ENSDARG00000095947	adkb	12: 46841918 ~ 46868634 (+)
ENSDARG00000078973	uckl1b	23: 13528053 ~ 13600004 (+)
ENSDARG00000022218	uck1	21: 4227260 ~ 4244514 (-)
ENSDARG00000102245	tk1	11: 45153104 ~ 45158056 (+)
ENSDARG00000057575	pnp4a	11: 24251141 ~ 24299538 (+)
ENSDARG00000038199	cdab	11: 3585934 ~ 3593118 (+)
ENSDARG00000086853	dpyda.3	24: 30521619 ~ 30774116 (+)
ENSDARG00000070830	zgc:136858	25: 20027175 ~ 20049449 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	Hepatocytes (cluster: 11)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Hepatocytes (cluster: 9)	potential marker	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Hepatocytes (cluster: 1)	potential marker	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000036833

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences